Bug 2220422
Summary: | F39FailsToInstall: python3-pybids+plotting, python3-pybids+test, python3-pybids+tests, python3-pybids | ||
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Product: | [Fedora] Fedora | Reporter: | Fedora Fails To Install <fti-bugs> |
Component: | python-pybids | Assignee: | Ankur Sinha (FranciscoD) <sanjay.ankur> |
Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
Severity: | unspecified | Docs Contact: | |
Priority: | unspecified | ||
Version: | 39 | CC: | fzatlouk, gui1ty, mhroncok, neuro-sig, sanjay.ankur |
Target Milestone: | --- | Keywords: | Reopened |
Target Release: | --- | ||
Hardware: | Unspecified | ||
OS: | Unspecified | ||
Whiteboard: | AcceptedFreezeException | ||
Fixed In Version: | python-pybids-0.16.3-3.fc40 python-pybids-0.16.3-3.fc39 | Doc Type: | If docs needed, set a value |
Doc Text: | Story Points: | --- | |
Clone Of: | Environment: | ||
Last Closed: | 2023-09-06 23:38:54 UTC | Type: | --- |
Regression: | --- | Mount Type: | --- |
Documentation: | --- | CRM: | |
Verified Versions: | Category: | --- | |
oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
Cloudforms Team: | --- | Target Upstream Version: | |
Embargoed: | |||
Bug Depends On: | 2220239, 2220279, 2220356 | ||
Bug Blocks: | 2168845, 2135404, 2143445 |
Description
Fedora Fails To Install
2023-07-05 19:18:23 UTC
Hello, Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/ This package fails to install and maintainers are advised to take one of the following actions: - Fix this bug and close this bugzilla once the update makes it to the repository. (The same script that posted this comment will eventually close this bugzilla when the fixed package reaches the repository, so you don't have to worry about it.) or - Move this bug to ASSIGNED if you plan on fixing this, but simply haven't done so yet. or - Orphan the package if you no longer plan to maintain it. If you do not take one of these actions, the process at https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/#_package_removal_for_long_standing_ftbfs_and_fti_bugs will continue. This package may be orphaned in 7+ weeks. This is the first reminder (step 3) from the policy. Don't hesitate to ask for help on devel.org if you are unsure how to fix this bug. Test failure: =================================== FAILURES =================================== _________ test_run_variable_collection_bad_length_to_df_all_dense_vars _________ run_coll_bad_length = <BIDSRunVariableCollection['PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat', 'respnum', 'trial_type']> def test_run_variable_collection_bad_length_to_df_all_dense_vars(run_coll_bad_length): timing_cols = {'onset', 'duration'} entity_cols = {'subject', 'run', 'task', 'suffix', 'datatype'} cond_names = {'PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat', 'respnum', 'trial_type'} md_names = {'TaskName', 'RepetitionTime', 'extension', 'SliceTiming'} condition = {'condition'} ampl = {'amplitude'} unif_coll = run_coll_bad_length.to_dense(sampling_rate=10) > df = unif_coll.to_df() bids/variables/tests/test_collections.py:238: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bids/variables/collections.py:625: in to_df return super().to_df( bids/variables/collections.py:152: in to_df dfs = [v.to_df(True, True, timing=True) for v in variables] bids/variables/variables.py:618: in to_df df['onset'] = self.timestamps.values.astype(float) / 1e+9 /usr/lib64/python3.12/site-packages/pandas/core/frame.py:3980: in __setitem__ self._set_item(key, value) /usr/lib64/python3.12/site-packages/pandas/core/frame.py:4174: in _set_item value = self._sanitize_column(value) /usr/lib64/python3.12/site-packages/pandas/core/frame.py:4915: in _sanitize_column com.require_length_match(value, self.index) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ data = array([0.0000e+00, 1.0000e-01, 2.0000e-01, ..., 4.3206e+03, 4.3207e+03, 4.3208e+03]) index = RangeIndex(start=0, stop=43210, step=1) def require_length_match(data, index: Index) -> None: """ Check the length of data matches the length of the index. """ if len(data) != len(index): > raise ValueError( "Length of values " f"({len(data)}) " "does not match length of index " f"({len(index)})" ) E ValueError: Length of values (43209) does not match length of index (43210) /usr/lib64/python3.12/site-packages/pandas/core/common.py:571: ValueError I reported it upstream. This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle. Changing version to 39. FEDORA-2023-7af62fc24a has been submitted as an update to Fedora 40. https://bodhi.fedoraproject.org/updates/FEDORA-2023-7af62fc24a FEDORA-2023-7af62fc24a has been pushed to the Fedora 40 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-2023-cae9a8b6f8 has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-cae9a8b6f8 *** Bug 2237541 has been marked as a duplicate of this bug. *** FEDORA-2023-cae9a8b6f8 has been pushed to the Fedora 39 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-cae9a8b6f8` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-cae9a8b6f8 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. Discussed in ticket: https://pagure.io/fedora-qa/blocker-review/issue/1279 The decision to classify this bug as an AcceptedFreezeException was made: "We usually pull in FTI fixes." FEDORA-2023-cae9a8b6f8 has been pushed to the Fedora 39 stable repository. If problem still persists, please make note of it in this bug report. |