Bug 1328652 - pymol-v1.8.2.1 is available
Summary: pymol-v1.8.2.1 is available
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: pymol
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Tim Fenn
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2016-04-20 00:23 UTC by Upstream Release Monitoring
Modified: 2016-07-05 08:25 UTC (History)
2 users (show)

Fixed In Version: pymol-1.8.2.2-1.20160625svn4159.fc24 pymol-1.8.2.2-1.20160625svn4159.fc23
Clone Of:
Environment:
Last Closed: 2016-07-05 04:59:15 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)
Rebase-helper rebase-helper-debug.log log file. See for details and report the eventual error to rebase-helper https://github.com/phracek/rebase-helper/issues. (5.28 KB, patch)
2016-04-20 00:24 UTC, Upstream Release Monitoring
no flags Details | Diff
Rebase-helper rebase-helper-debug.log log file. See for details and report the eventual error to rebase-helper https://github.com/phracek/rebase-helper/issues. (5.28 KB, patch)
2016-05-28 00:22 UTC, Upstream Release Monitoring
no flags Details | Diff
spec file for v1.8.2.1 (12.59 KB, text/x-matlab)
2016-05-30 13:55 UTC, Vedran Miletić
no flags Details
spec file for v1.8.2.1 (12.59 KB, patch)
2016-05-30 14:07 UTC, Vedran Miletić
no flags Details | Diff

Description Upstream Release Monitoring 2016-04-20 00:23:50 UTC
Latest upstream release: v1.8.2.0
Current version/release in rawhide: 1.8-4.20151208svn4142.fc25
URL: http://sourceforge.net/projects/pymol

Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy

More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring

Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.

Based on the information from anitya:  https://release-monitoring.org/project/3750/

Comment 1 Upstream Release Monitoring 2016-04-20 00:24:20 UTC
Patching or scratch build for pymol-1.8 failed.

Comment 2 Upstream Release Monitoring 2016-04-20 00:24:21 UTC
Created attachment 1148820 [details]
Rebase-helper rebase-helper-debug.log log file.
See for details and report the eventual error to rebase-helper https://github.com/phracek/rebase-helper/issues.

Comment 3 Upstream Release Monitoring 2016-04-20 00:24:22 UTC
Following patches has been deleted:
['nodejs-mapnik-boost.patch']

Comment 4 Upstream Release Monitoring 2016-04-20 00:24:23 UTC
Following patches has been modified:
['/var/tmp/thn-rhMjFAAq/rebase-helper-results/nodejs-mapnik-pregyp.patch']

Comment 5 Upstream Release Monitoring 2016-04-20 00:24:24 UTC
Following patches has been unapplied:
['nodejs-mapnik-boost.patch']

Comment 6 Upstream Release Monitoring 2016-05-28 00:21:53 UTC
Latest upstream release: v1.8.2.1
Current version/release in rawhide: 1.8-4.20151208svn4142.fc25
URL: http://sourceforge.net/projects/pymol

Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy

More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring

Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.

Based on the information from anitya:  https://release-monitoring.org/project/3750/

Comment 7 Upstream Release Monitoring 2016-05-28 00:22:20 UTC
Patching or scratch build for pymol-1.8 failed.

Comment 8 Upstream Release Monitoring 2016-05-28 00:22:21 UTC
Created attachment 1162578 [details]
Rebase-helper rebase-helper-debug.log log file.
See for details and report the eventual error to rebase-helper https://github.com/phracek/rebase-helper/issues.

Comment 9 Upstream Release Monitoring 2016-05-28 00:22:22 UTC
Following patches has been deleted:
['opensips-0001-Consistently-use-rtpproxy-switches.patch', 'opensips-0003-Removed-all-async-Oracle-operations-they-didn-t-work.patch', 'opensips-0004-db_oracle-Fix-default-ret-result.patch', 'opensips-0007-Use-additional-auth-field-Sip-Source-IP-Address.patch', 'opensips-0008-Don-t-remove-pthread-library-explicitly-from-mi_xmlr.patch']

Comment 10 Upstream Release Monitoring 2016-05-28 00:22:23 UTC
Following patches has been modified:
['/var/tmp/thn-rhDIIgJ5/rebase-helper-results/opensips-0008-Don-t-remove-pthread-library-explicitly-from-mi_xmlr.patch']

Comment 11 Upstream Release Monitoring 2016-05-28 00:22:24 UTC
Following patches has been unapplied:
['opensips-0002-Cleanup-Oracle-s-makefiles.patch', 'opensips-0005-Don-t-modify-interim-return-value.patch', 'opensips-0006-Return-actual-payload-ID-in-case-of-a-dynamic-payloa.patch', 'opensips-0009-backport-rtpengine-up-to-64bc0c8226ccb6d531dfa230cce.patch', 'opensips-0011-added-more-rtp-transports-to-match-those-available-i.patch', 'opensips-0014-rtpengine-do-not-register-mi-functions-twice.patch', 'opensips-0016-Fix-functions-to-match-their-documented-API-Change-f.patch', 'opensips-0021-use-gnu89-for-newer-compilers-no-matter-what-arch-bu.patch', 'opensips-0023-Fix-STANDARD-and-EXTRA-list-of-tables.patch', 'opensips-0024-Fixed-wrong-warning-on-memory-leak.patch', 'opensips-0029-Fix-contact-DB-delete-in-CONTACT_ONLY-macthing.patch']

Comment 12 Vedran Miletić 2016-05-30 13:55:30 UTC
Created attachment 1162805 [details]
spec file for v1.8.2.1

Comment 13 Vedran Miletić 2016-05-30 13:59:56 UTC
Tim, only trivial changes are necessary for PyMOL to be updated to 1.8.2.1, which would be much appreciated by the members of my lab, as is your work so far. :-)

I have provided a working spec file above, which updates to 1.8.2.1 and fixes some warnings regarding changelog. Any chance this is acceptable?

I'm posting the diff as well:

--- a/pymol.spec	2016-03-13 20:25:48.000000000 +0100
+++ b/pymol.spec	2016-05-30 15:52:38.787109345 +0200
@@ -2,16 +2,12 @@
 
 Summary: PyMOL Molecular Graphics System
 Name: pymol
-Version: 1.8
-Release: 4.20151208svn4142%{?dist}
+Version: 1.8.2.1
+Release: 1%{?dist}
 License: MIT and BSD and ZPLv2.0 and Bitstream Vera and OFL
 Group: Applications/Engineering
 URL: http://www.pymol.org
-# The source for this package was pulled from upstream's vcs.  Use the
-# following commands to generate the tarball:
-#  svn export -r 4142 svn://svn.code.sf.net/p/pymol/code/trunk/pymol pymol-1.8
-#  tar cvJf pymol-1.8-20151208svn4142.tar.xz pymol-1.8
-Source0: pymol-1.8-20151208svn4142.tar.xz
+Source0: pymol-v%{version}.tar.bz2
 Source1: %{name}.png
 Source2: %{name}.desktop
 Source3: %{name}.appdata.xml
@@ -60,7 +56,7 @@
 pymol via wxpython widgets.
 
 %prep
-%setup -q
+%setup -q -n pymol
 %patch0 -p0
 %patch1 -p0
 %patch2 -p0
@@ -137,7 +133,10 @@
 %{python_sitearch}/pmg_wx/
 
 %changelog
-* Sat Mar 12 2016 Tim fenn - 1.8-4.20151208svn4142
+* Sat Mar 12 2016 Vedran Miletic <vedran> - 1.8.2.1
+- update to 1.8.2.1
+
+* Sat Mar 12 2016 Tim Fenn <tim.fenn> - 1.8-4.20151208svn4142
 - add WM_CLASS patches (BZ 1311626)
 
 * Thu Feb 04 2016 Fedora Release Engineering <releng> - 1.8-3.20151208svn4142
@@ -210,7 +209,7 @@
 * Sat Jul 21 2012 Fedora Release Engineering <rel-eng.org> - 1.5.0.2-4.20120218svn3982
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
 
-* Sat Jul 08 2012 Tim Fenn <tim.fenn> - 1.5.0.2-3.20120218svn3982
+* Fri Jul 08 2012 Tim Fenn <tim.fenn> - 1.5.0.2-3.20120218svn3982
 - remove web module to fix conflict with python-webpy, reported upstream
 
 * Tue May 01 2012 Gökçen Eraslan <gokcen.eraslan> - 1.5.0.2-2.20120218svn3982
@@ -282,7 +281,7 @@
 * Tue Jul 21 2009 Tim Fenn <fenn> - 1.2-6.20090709svn3827
 - include chempy, pmg_tk and tut subdirectories in data folder
 
-* Thu Jul 07 2009 Tim Fenn <fenn> - 1.2-5.20090709svn3827
+* Tue Jul 07 2009 Tim Fenn <fenn> - 1.2-5.20090709svn3827
 - update to SVN 3827, 1.2r1
 
 * Fri Jun 12 2009 Tim Fenn <fenn> - 1.2-4.20090612svn3729

Comment 14 Vedran Miletić 2016-05-30 14:07:51 UTC
Created attachment 1162808 [details]
spec file for v1.8.2.1

Oops, Jul 08 2012 was Sun, not Fri

Comment 15 Tim Fenn 2016-06-01 16:50:02 UTC
(In reply to Vedran Miletić from comment #13)
> Tim, only trivial changes are necessary for PyMOL to be updated to 1.8.2.1,
> which would be much appreciated by the members of my lab, as is your work so
> far. :-)
> 
> I have provided a working spec file above, which updates to 1.8.2.1 and
> fixes some warnings regarding changelog. Any chance this is acceptable?
> 

Sure - I'll try to get to work on this soon (sorry, life has been crazy lately).  I'd even be willing to add people as co-maintainers of the package, if you'd be so inclined!

Comment 16 Vedran Miletić 2016-06-10 09:30:12 UTC
(In reply to Tim Fenn from comment #15)
> Sure - I'll try to get to work on this soon (sorry, life has been crazy
> lately).  I'd even be willing to add people as co-maintainers of the
> package, if you'd be so inclined!

Sure.

Comment 17 Fedora Update System 2016-06-26 03:41:42 UTC
pymol-1.8.2.2-1.20160625svn4159.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-915de71507

Comment 18 Fedora Update System 2016-06-26 03:41:53 UTC
pymol-1.8.2.2-1.20160625svn4159.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2016-06eeb5f89a

Comment 19 Fedora Update System 2016-06-26 19:24:06 UTC
pymol-1.8.2.2-1.20160625svn4159.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-06eeb5f89a

Comment 20 Fedora Update System 2016-06-26 19:26:05 UTC
pymol-1.8.2.2-1.20160625svn4159.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-915de71507

Comment 21 Fedora Update System 2016-07-05 04:59:12 UTC
pymol-1.8.2.2-1.20160625svn4159.fc24 has been pushed to the Fedora 24 stable repository. If problems still persist, please make note of it in this bug report.

Comment 22 Fedora Update System 2016-07-05 08:24:58 UTC
pymol-1.8.2.2-1.20160625svn4159.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report.


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