Bug 1349075 - Review Request: cxsc - C++ library for Extended Scientific Computing
Summary: Review Request: cxsc - C++ library for Extended Scientific Computing
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: gil cattaneo
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: 1352175
TreeView+ depends on / blocked
 
Reported: 2016-06-22 16:24 UTC by Jerry James
Modified: 2016-07-27 18:55 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2016-07-27 18:55:28 UTC
Type: ---
Embargoed:
puntogil: fedora-review+


Attachments (Terms of Use)
licensecheck.txt (60.49 KB, text/plain)
2016-07-15 17:13 UTC, gil cattaneo
no flags Details

Description Jerry James 2016-06-22 16:24:26 UTC
Spec URL: https://jjames.fedorapeople.org/cxsc/cxsc.spec
SRPM URL: https://jjames.fedorapeople.org/cxsc/cxsc-2.5.4-1.fc25.src.rpm
Fedora Account System Username: jjames
Description:
C-XSC is the C language variant of the XSC (eXtensions for Scientific
Computing) project.  It provides routines that guarantee accuracy and
reliability of results.  Problem-solving routines with automatic result
verification have been developed for many standard problems of numerical
analysis, such as linear or nonlinear systems of equations, differential
and integral equations, etc. as well as for a large number of
applications in engineering and the natural sciences.  Some of the
features of C-XSC are:
- Operator concept (user-defined operators)
- Overloading concept
- Module concept
- Dynamic arrays
- Controlled rounding
- Predefined arithmetic data types real, extended real, complex,
  interval, complex interval, and corresponding vector and matrix types
- Predefined arithmetic operators and elementary functions of the highest
  accuracy for the arithmetic data types
- Data type dotprecision for the exact representation of dot products
- Library of mathematical problem-solving routines with automatic result
  verification and high accuracy

Comment 1 Jerry James 2016-06-22 16:26:22 UTC
Scratch build: http://koji.fedoraproject.org/koji/taskinfo?taskID=14606902

Comment 2 Igor Gnatenko 2016-07-07 18:48:56 UTC
> Version:        %(tr - . <<< %{upstreamver})
Version: %(v=%{upstreamver}; echo ${v//-/.})

> %global majver  %(cut -d. -f1 <<< %{version})
%global majver %(v=%{version}; echo ${v%%.*})

> if [ %{_libdir} = "%{_prefix}/lib64" ]; then
>   sed -i 's|/lib|/lib64|' CToolbox/Makefile
> fi
sed -i -e 's|/lib|/%{_lib}|' CToolbox/Makefile

> %{_libdir}/sse2/lib%{name}.so.2*
not sure how it should be properly handled (SSE2 things)

Comment 3 Jerry James 2016-07-13 22:20:55 UTC
Hi Igor.  Thanks for the suggestions.

(In reply to Igor Gnatenko from comment #2)
> > Version:        %(tr - . <<< %{upstreamver})
> Version: %(v=%{upstreamver}; echo ${v//-/.})

Why is that better?

> > %global majver  %(cut -d. -f1 <<< %{version})
> %global majver %(v=%{version}; echo ${v%%.*})

Why is that better?

> > if [ %{_libdir} = "%{_prefix}/lib64" ]; then
> >   sed -i 's|/lib|/lib64|' CToolbox/Makefile
> > fi
> sed -i -e 's|/lib|/%{_lib}|' CToolbox/Makefile

Okay, I can see this one.  I will make that change.

> > %{_libdir}/sse2/lib%{name}.so.2*
> not sure how it should be properly handled (SSE2 things)

I don't understand what you are talking about with this one.

Comment 4 gil cattaneo 2016-07-15 16:05:07 UTC
have time for this https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=1353598 ?

Comment 5 gil cattaneo 2016-07-15 16:23:56 UTC
maybe you can safety remove jquery
from https://fedoraproject.org/wiki/Changes/jQuery
ln -fs %{_datadir}/javascript/jquery/[jquery VERSION]/jquery.min.js [BUNDLE LIBRARY PATH]/jquery.js

Comment 6 gil cattaneo 2016-07-15 17:10:59 UTC
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- All build dependencies are listed in BuildRequires, except for any that
  are listed in the exceptions section of Packaging Guidelines.
  Note: These BR are not needed: gcc-c++
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#Exceptions_2
 Please, remove BuildRequires:  gcc-c++

===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig called in %post and %postun if required.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "LGPL (v2 or later) (with incorrect FSF address)", "Unknown or
     generated". 64 files have unknown license. Detailed output of
     licensecheck in /home/gil/1349075-cxsc/licensecheck.txt

   Please, report "LGPL (v2 or later) (with incorrect FSF address)" to upstream
   
[x]: License file installed when any subpackage combination is installed.
[x]: %build honors applicable compiler flags or justifies otherwise.
[?]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 61440 bytes in 14 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in cxsc-
     debuginfo
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[x]: Scriptlets must be sane, if used.
[x]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[?]: %check is present and all tests pass.
[?]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[!]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
     Note: Arch-ed rpms have a total of 59545600 bytes in /usr/share cxsc-
     doc-2.5.4-1.fc25.i686.rpm:59453440
     See:
     http://fedoraproject.org/wiki/Packaging:ReviewGuidelines#Package_Review_Guidelines
    False
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: cxsc-2.5.4-1.fc25.i686.rpm
          cxsc-devel-2.5.4-1.fc25.i686.rpm
          cxsc-doc-2.5.4-1.fc25.i686.rpm
          cxsc-debuginfo-2.5.4-1.fc25.i686.rpm
          cxsc-2.5.4-1.fc25.src.rpm
cxsc.i686: W: spelling-error %description -l en_US eXtensions -> extensions, extension, extension's
cxsc.i686: W: spelling-error %description -l en_US dotprecision -> dot precision, dot-precision, imprecision
cxsc.i686: W: shared-lib-calls-exit /usr/lib/libcxsc.so.2.5.4 exit
cxsc.i686: E: incorrect-fsf-address /usr/share/licenses/cxsc/COPYING
cxsc.src: W: spelling-error %description -l en_US eXtensions -> extensions, extension, extension's
cxsc.src: W: spelling-error %description -l en_US dotprecision -> dot precision, dot-precision, imprecision
cxsc.src:55: W: unversioned-explicit-provides bundled(jquery)
cxsc.src:113: W: rpm-buildroot-usage %build %{buildroot}%{_prefix}\n\
cxsc.src:141: W: rpm-buildroot-usage %build %{buildroot}%{_prefix}\n\
5 packages and 0 specfiles checked; 1 errors, 8 warnings.




Rpmlint (debuginfo)
-------------------
Checking: cxsc-debuginfo-2.5.4-1.fc25.i686.rpm
1 packages and 0 specfiles checked; 0 errors, 0 warnings.





Rpmlint (installed packages)
----------------------------
cxsc.i686: W: spelling-error %description -l en_US eXtensions -> extensions, extension, extension's
cxsc.i686: W: spelling-error %description -l en_US dotprecision -> dot precision, dot-precision, imprecision
cxsc.i686: W: shared-lib-calls-exit /usr/lib/libcxsc.so.2.5.4 exit
cxsc.i686: E: incorrect-fsf-address /usr/share/licenses/cxsc/COPYING
4 packages and 0 specfiles checked; 1 errors, 3 warnings.



Requires
--------
cxsc-debuginfo (rpmlib, GLIBC filtered):

cxsc-devel (rpmlib, GLIBC filtered):
    cxsc(x86-32)
    libcxsc.so.2

cxsc-doc (rpmlib, GLIBC filtered):
    cxsc(x86-32)

cxsc (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    ld-linux.so.2
    libc.so.6
    libgcc_s.so.1
    libgcc_s.so.1(GCC_3.0)
    libgomp.so.1
    libgomp.so.1(GOMP_4.0)
    libgomp.so.1(OMP_1.0)
    libm.so.6
    libsatlas.so.3
    libstdc++.so.6
    libstdc++.so.6(CXXABI_1.3)
    libstdc++.so.6(CXXABI_1.3.8)
    libstdc++.so.6(CXXABI_1.3.9)
    rtld(GNU_HASH)



Provides
--------
cxsc-debuginfo:
    cxsc-debuginfo
    cxsc-debuginfo(x86-32)

cxsc-devel:
    cxsc-devel
    cxsc-devel(x86-32)

cxsc-doc:
    bundled(jquery)
    cxsc-doc
    cxsc-doc(x86-32)

cxsc:
    cxsc
    cxsc(x86-32)
    libcxsc.so.2



Source checksums
----------------
http://www2.math.uni-wuppertal.de/wrswt/xsc/cxsc/cxsc-2-5-4.tar.gz :
  CHECKSUM(SHA256) this package     : fd0d824fd94bef3aae55b95e5ef19342b653fe3ff4fb561364e942c809eb616b
  CHECKSUM(SHA256) upstream package : fd0d824fd94bef3aae55b95e5ef19342b653fe3ff4fb561364e942c809eb616b


Generated by fedora-review 0.6.1 (f03e4e7) last change: 2016-05-02
Command line :/usr/bin/fedora-review -b 1349075 --plugins C/C++ -m fedora-rawhide-i386
Buildroot used: fedora-rawhide-i386
Active plugins: Generic, Shell-api, C/C++
Disabled plugins: Java, Python, fonts, SugarActivity, Ocaml, Perl, Haskell, R, PHP
Disabled flags: EXARCH, DISTTAG, EPEL5, BATCH, EPEL6

Comment 7 gil cattaneo 2016-07-15 17:12:54 UTC
Issues (non blocking):

- All build dependencies are listed in BuildRequires, except for any that
  are listed in the exceptions section of Packaging Guidelines.
  Note: These BR are not needed: gcc-c++
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#Exceptions_2
 Please, remove BuildRequires:  gcc-c++

[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "LGPL (v2 or later) (with incorrect FSF address)", "Unknown or
     generated". 64 files have unknown license. Detailed output of
     licensecheck in /home/gil/1349075-cxsc/licensecheck.txt

cxsc.i686: E: incorrect-fsf-address /usr/share/licenses/cxsc/COPYING



Please, report "LGPL (v2 or later) (with incorrect FSF address)" to upstream

Comment 8 gil cattaneo 2016-07-15 17:13:34 UTC
Created attachment 1180222 [details]
licensecheck.txt

Comment 9 Jerry James 2016-07-15 20:00:06 UTC
(In reply to gil cattaneo from comment #5)
> maybe you can safety remove jquery
> from https://fedoraproject.org/wiki/Changes/jQuery
> ln -fs %{_datadir}/javascript/jquery/[jquery VERSION]/jquery.min.js [BUNDLE
> LIBRARY PATH]/jquery.js

Oh, I didn't know the migration was ready to happen.  Great!  I will make this change.

Except it doesn't work.  Doxygen inserts a copy of jquery 1.7.1.  I tried using the system version of jquery 1 (currently 1.11.2), and the sidebar became blank, and overlapped the main region of the window.  Apparently js-jquery-migrate is required, but that means editing every single HTML file to insert the appropriate magic.  Ugh.  I don't want to do this.  The right fix is to update doxygen so that it can use jquery 1.9 or later, then the symlink trick will work.  There is an upstream bug to do this: https://bugzilla.gnome.org/show_bug.cgi?id=768492.

As for BuildRequires: gcc-c++, that is now required.  See https://fedoraproject.org/wiki/Packaging:C_and_C%2B%2B#BuildRequires_and_Requires.  Apparently rpmlint has not yet been updated to reflect this change.

I will contact upstream about the incorrect FSF address.  They moved in, what, 2005?  It's strange how many projects haven't noticed that more than a decade later.

Comment 10 gil cattaneo 2016-07-15 20:12:16 UTC

(In reply to Jerry James from comment #9)
> (In reply to gil cattaneo from comment #5)
> > maybe you can safety remove jquery
> > from https://fedoraproject.org/wiki/Changes/jQuery
> > ln -fs %{_datadir}/javascript/jquery/[jquery VERSION]/jquery.min.js [BUNDLE
> > LIBRARY PATH]/jquery.js
> 
> Oh, I didn't know the migration was ready to happen.  Great!  I will make
> this change.
> 
> Except it doesn't work.  Doxygen inserts a copy of jquery 1.7.1.  I tried
> using the system version of jquery 1 (currently 1.11.2), and the sidebar
> became blank, and overlapped the main region of the window.  Apparently
> js-jquery-migrate is required, but that means editing every single HTML file
> to insert the appropriate magic.  Ugh.  I don't want to do this.  The right
> fix is to update doxygen so that it can use jquery 1.9 or later, then the
> symlink trick will work.  There is an upstream bug to do this:
> https://bugzilla.gnome.org/show_bug.cgi?id=768492.

leave the bundle js file 

> As for BuildRequires: gcc-c++, that is now required.  See
> https://fedoraproject.org/wiki/Packaging:
> C_and_C%2B%2B#BuildRequires_and_Requires.  Apparently rpmlint has not yet
> been updated to reflect this change.

Someone have noticed of this change in the development list?

> I will contact upstream about the incorrect FSF address.  They moved in,
> what, 2005?  It's strange how many projects haven't noticed that more than a
> decade later.

Approved

Comment 11 Jerry James 2016-07-15 20:27:59 UTC
(In reply to gil cattaneo from comment #10)
> Someone have noticed of this change in the development list?

Yes, see the thread here:
https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/message/XGXCCAJNEOIEN3KK6TN2657LSIGZGB3N/

Thank you for the review!

Comment 12 Gwyn Ciesla 2016-07-15 20:35:33 UTC
Package request has been approved: https://admin.fedoraproject.org/pkgdb/package/rpms/cxsc

Comment 13 Fedora Update System 2016-07-15 22:03:14 UTC
cxsc-2.5.4-1.fc24 has been submitted as an update to Fedora 24. https://bodhi.fedoraproject.org/updates/FEDORA-2016-73a734e090

Comment 14 Fedora Update System 2016-07-16 22:57:08 UTC
cxsc-2.5.4-1.fc24 has been pushed to the Fedora 24 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-73a734e090

Comment 15 Fedora Update System 2016-07-27 18:55:26 UTC
cxsc-2.5.4-1.fc24 has been pushed to the Fedora 24 stable repository. If problems still persist, please make note of it in this bug report.


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