Spec URL: https://ankursinha.fedorapeople.org/python-lfpykit/python-lfpykit.spec SRPM URL: https://ankursinha.fedorapeople.org/python-lfpykit/python-lfpykit-0.3-1.fc34.src.rpm Description: This Python module contain freestanding implementations of electrostatic forward models incorporated in LFPy (https://github.com/LFPy/LFPy, https://LFPy.readthedocs.io). The aim of the LFPykit module is to provide electrostatic models in a manner that facilitates forward-model predictions of extracellular potentials and related measures from multicompartment neuron models, but without explicit dependencies on neural simulation software such as NEURON (https://neuron.yale.edu, https://github.com/neuronsimulator/nrn), Arbor (https://arbor.readthedocs.io, https://github.com/arbor-sim/arbor), or even LFPy. The LFPykit module can then be more easily incorporated with these simulators, or in various projects that utilize them such as LFPy (https://LFPy.rtfd.io, https://github.com/LFPy/LFPy). BMTK (https://alleninstitute.github.io/bmtk/, https://github.com/AllenInstitute/bmtk), etc. Its main functionality is providing class methods that return two-dimensional linear transformation matrices M between transmembrane currents I of multicompartment neuron models and some measurement Y given by Y=MI. The presently incorporated volume conductor models have been incorporated in LFPy (https://LFPy.rtfd.io, https://github.com/LFPy/LFPy), as described in various papers and books: - Linden H, Hagen E, Leski S, Norheim ES, Pettersen KH, Einevoll GT (2014) LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Front. Neuroinform. 7:41. doi: 10.3389/fninf.2013.00041 - Hagen E, Næss S, Ness TV and Einevoll GT (2018) Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Front. Neuroinform. 12:92. doi: 10.3389/fninf.2018.00092 - Ness, T. V., Chintaluri, C., Potworowski, J., Leski, S., Glabska, H., Wójcik, D. K., et al. (2015). Modelling and analysis of electrical potentials recorded in microelectrode arrays (MEAs). Neuroinformatics 13:403–426. doi: 10.1007/s12021-015-9265-6 - Nunez and Srinivasan, Oxford University Press, 2006 - Næss S, Chintaluri C, Ness TV, Dale AM, Einevoll GT and Wójcik DK (2017). Corrected Four-sphere Head Model for EEG Signals. Front. Hum. Neurosci. 11:490. doi: 10.3389/fnhum.2017.00490 Fedora Account System Username: ankursinha
Hey Ankur! The package is perfect, and I was not able to find any flaws in it. Approved. Below is the automated fedora review. ============================================= This is a review *template*. Besides handling the [ ]-marked tests you are also supposed to fix the template before pasting into bugzilla: - Add issues you find to the list of issues on top. If there isn't such a list, create one. - Add your own remarks to the template checks. - Add new lines marked [!] or [?] when you discover new things not listed by fedora-review. - Change or remove any text in the template which is plain wrong. In this case you could also file a bug against fedora-review - Remove the "[ ] Manual check required", you will not have any such lines in what you paste. - Remove attachments which you deem not really useful (the rpmlint ones are mandatory, though) - Remove this text Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated [ ] = Manual review needed ===== MUST items ===== Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "*No copyright* GNU General Public License", "*No copyright* GNU General Public License v3.0 or later", "GNU General Public License v3.0 or later". 22 files have unknown license. Detailed output of licensecheck in /home/major/Documents/NeuroFedora/review/1976640-python- lfpykit/licensecheck.txt [x]: License file installed when any subpackage combination is installed. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [-]: Package is not known to require an ExcludeArch tag. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 20480 bytes in 1 files. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [x]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in python3-LFPykit [x]: Package functions as described. [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: python3-LFPykit-0.3-1.fc35.noarch.rpm python-lfpykit-doc-0.3-1.fc35.noarch.rpm python-lfpykit-0.3-1.fc35.src.rpm python3-LFPykit.noarch: W: spelling-error Summary(en_US) multicompartment -> compartmentalize, compartmentalization, compartmental python3-LFPykit.noarch: W: spelling-error %description -l en_US extracellular -> extra cellular, extra-cellular, extracurricular python3-LFPykit.noarch: W: spelling-error %description -l en_US multicompartment -> compartmentalize, compartmentalization, compartmental python3-LFPykit.noarch: W: spelling-error %description -l en_US transmembrane -> trans membrane, trans-membrane, transmittance python3-LFPykit.noarch: W: spelling-error %description -l en_US Neuroinform -> Uninformative python3-LFPykit.noarch: W: spelling-error %description -l en_US doi -> dpi, do, oi python3-LFPykit.noarch: W: spelling-error %description -l en_US fninf -> inf python3-LFPykit.noarch: W: spelling-error %description -l en_US et -> ET, wt, rt python3-LFPykit.noarch: W: spelling-error %description -l en_US al -> AL, la, Al python3-LFPykit.noarch: W: spelling-error %description -l en_US Modelling -> Modeling, Model ling, Model-ling python3-LFPykit.noarch: W: spelling-error %description -l en_US microelectrode -> micro electrode, micro-electrode, microelectronic python3-LFPykit.noarch: W: spelling-error %description -l en_US Neuroinformatics -> Informativeness python3-LFPykit.noarch: W: spelling-error %description -l en_US Neurosci -> Neurosis python3-LFPykit.noarch: W: spelling-error %description -l en_US fnhum -> inhuman python-lfpykit-doc.noarch: W: spelling-error Summary(en_US) multicompartment -> compartmentalize, compartmentalization, compartmental python-lfpykit-doc.noarch: W: description-shorter-than-summary python-lfpykit.src: W: spelling-error Summary(en_US) multicompartment -> compartmentalize, compartmentalization, compartmental python-lfpykit.src: W: spelling-error %description -l en_US extracellular -> extra cellular, extra-cellular, extracurricular python-lfpykit.src: W: spelling-error %description -l en_US multicompartment -> compartmentalize, compartmentalization, compartmental python-lfpykit.src: W: spelling-error %description -l en_US transmembrane -> trans membrane, trans-membrane, transmittance python-lfpykit.src: W: spelling-error %description -l en_US Neuroinform -> Uninformative python-lfpykit.src: W: spelling-error %description -l en_US doi -> dpi, do, oi python-lfpykit.src: W: spelling-error %description -l en_US fninf -> inf python-lfpykit.src: W: spelling-error %description -l en_US et -> ET, wt, rt python-lfpykit.src: W: spelling-error %description -l en_US al -> AL, la, Al python-lfpykit.src: W: spelling-error %description -l en_US Modelling -> Modeling, Model ling, Model-ling python-lfpykit.src: W: spelling-error %description -l en_US microelectrode -> micro electrode, micro-electrode, microelectronic python-lfpykit.src: W: spelling-error %description -l en_US Neuroinformatics -> Informativeness python-lfpykit.src: W: spelling-error %description -l en_US Neurosci -> Neurosis python-lfpykit.src: W: spelling-error %description -l en_US fnhum -> inhuman 3 packages and 0 specfiles checked; 0 errors, 30 warnings. Rpmlint (installed packages) ---------------------------- Cannot parse rpmlint output: Source checksums ---------------- https://files.pythonhosted.org/packages/source/L/LFPykit/LFPykit-0.3.tar.gz : CHECKSUM(SHA256) this package : 35aa56c83e32d1477637e77886e3ae209ffca9e04890f5cc912cb7195c16d00c CHECKSUM(SHA256) upstream package : 35aa56c83e32d1477637e77886e3ae209ffca9e04890f5cc912cb7195c16d00c Requires -------- python3-LFPykit (rpmlib, GLIBC filtered): python(abi) python3.10dist(meautility) python3.10dist(numpy) python3.10dist(scipy) python-lfpykit-doc (rpmlib, GLIBC filtered): Provides -------- python3-LFPykit: python-LFPykit python3-LFPykit python3.10-LFPykit python3.10dist(lfpykit) python3dist(lfpykit) python-lfpykit-doc: python-lfpykit-doc Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10 Command line :/usr/bin/fedora-review -b 1976640 Buildroot used: fedora-rawhide-x86_64 Active plugins: Generic, Python, Shell-api Disabled plugins: Haskell, R, SugarActivity, C/C++, Perl, Java, PHP, fonts, Ocaml Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
Thanks very much. Yeh, it was quite a simple one :D I'll go request SCM now.
(fedscm-admin): The Pagure repository was created at https://src.fedoraproject.org/rpms/python-lfpykit