Bug 2034723 - Review Request: python-devicely - A Python package for reading, timeshifting and writing sensor data
Summary: Review Request: python-devicely - A Python package for reading, timeshifting ...
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Vanessa Christopher
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: fedora-neuro, NeuroFedora
TreeView+ depends on / blocked
 
Reported: 2021-12-21 19:51 UTC by Iztok Fister Jr.
Modified: 2022-02-04 01:21 UTC (History)
5 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2022-02-04 01:21:40 UTC
Type: ---
Embargoed:
vanessaigwe1: fedora-review+


Attachments (Terms of Use)

Description Iztok Fister Jr. 2021-12-21 19:51:27 UTC
Spec URL: https://raw.githubusercontent.com/firefly-cpp/rpm-devicely/main/python-devicely.spec
SRPM URL: https://github.com/firefly-cpp/rpm-devicely/raw/main/python-devicely-1.1.1-1.fc34.src.rpm

Description: Devicely is a Python package for reading, de-identifying and writing data from various health monitoring sensors. With devicely, you can read sensor data and have it easily accessible in dataframes. You can also de-identify data and write them back using their original data format. This makes it convenient to share sensor data with other researchers while mantaining people's privacy.

Fedora Account System Username: iztokf

Comment 1 Luna Jernberg 2022-01-17 13:44:53 UTC
info from todays meeting: vanessa_kris to review this during next week

Comment 2 Vanessa Christopher 2022-01-19 16:59:30 UTC
This is a pre-review

This looks good

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated


Issues:
=======
- Packages MUST NOT have dependencies (either build-time or runtime) on
  packages named with the unversioned python- prefix unless no properly
  versioned package exists. Dependencies on Python packages instead MUST
  use names beginning with python2- or python3- as appropriate.
  Note: Unversionned Python dependency found.
  See: https://docs.fedoraproject.org/en-US/packaging-
  guidelines/Python/#_dependencies


===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "MIT License", "*No copyright* MIT
     License". 151 files have unknown license. Detailed output of
     licensecheck in /home/vanessa/Desktop/reviews/2034723-python-
     devicely/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[x]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 10240 bytes in 2 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[x]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in
     python3-devicely
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
rpmlint: 2.1.0
configuration:
    /usr/lib/python3.10/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/licenses.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 31, packages: 1

 1 packages and 0 specfiles checked; 0 errors, 0 warnings, 0 badness; has taken 1.0 s 


Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Source checksums
----------------
https://github.com/hpi-dhc/devicely/archive/v1.1.1/devicely-1.1.1.tar.gz :
  CHECKSUM(SHA256) this package     : fa0536d79cfda60857e0d88a4bf072ebc462418d5f85621fcaa37aa72299e422
  CHECKSUM(SHA256) upstream package : fa0536d79cfda60857e0d88a4bf072ebc462418d5f85621fcaa37aa72299e422


Requires
--------
python3-devicely (rpmlib, GLIBC filtered):
    python(abi)
    python3.10dist(importlib-metadata)
    python3.10dist(numpy)
    python3.10dist(pandas)
    python3.10dist(pyedflib)

python-devicely-doc (rpmlib, GLIBC filtered):



Provides
--------
python3-devicely:
    python-devicely
    python3-devicely
    python3-devicely(x86-64)
    python3.10-devicely
    python3.10dist(devicely)
    python3dist(devicely)

python-devicely-doc:
    python-devicely-doc
    python-devicely-doc(x86-64)



Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
Command line :/usr/bin/fedora-review -b 2034723
Buildroot used: fedora-rawhide-x86_64
Active plugins: Shell-api, Generic, Python
Disabled plugins: PHP, Ocaml, Perl, R, Java, SugarActivity, Haskell, C/C++, fonts
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH

Comment 3 Iztok Fister Jr. 2022-01-20 21:31:22 UTC
Thanks Vanessa.

Do I need to wait for another review (since this is pre-review)?

Comment 4 Ankur Sinha (FranciscoD) 2022-01-24 14:12:07 UTC
No, Vanessa is now a member of the package maintainers group, so she can approve packages also. 

Vanessa, for this (and all future reviews), please approve packages when you're satisfied with your reviews.
The steps you need to take are documented here:

https://docs.fedoraproject.org/en-US/package-maintainers/Package_Review_Process/#_reviewer

(Of course, if you are unsure, feel free to ping one of us :))

Cheers,

Comment 5 Ankur Sinha (FranciscoD) 2022-01-24 14:19:24 UTC
Note: there's an issue here that needs correcting as noted in the review:

Requires: python-toml-adapt -> Requires: python3-toml-adapt

or: Requires: %{py3_dist toml-adapt}

It needs to be a versioned requirement.

- I also see that the debuginfo is disabled. Please enable it. Only if no useful debuginfo can be generated should it be explicitly disabled:
https://docs.fedoraproject.org/en-US/packaging-guidelines/#_debuginfo_packages

- Best to document the reason behind the patch as a comment
- python3-devel now pulls in pyproject-rpm-macros, so the explicit BR can be dropped

Comment 7 Vanessa Christopher 2022-01-25 17:24:17 UTC
looks good.

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "MIT License", "*No copyright* MIT
     License". 151 files have unknown license. Detailed output of
     licensecheck in /home/vanessa/Desktop/reviews/2034723-python-
     devicely/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[x]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 10240 bytes in 2 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in
     python3-devicely
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[x]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Spec use %global instead of %define unless justified.
     Note: %define requiring justification: %define debug_package %{nil}
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
rpmlint: 2.1.0
configuration:
    /usr/lib/python3.10/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/licenses.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 31, packages: 1

 1 packages and 0 specfiles checked; 0 errors, 0 warnings, 0 badness; has taken 0.3 s 



Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Source checksums
----------------
https://github.com/hpi-dhc/devicely/archive/v1.1.1/devicely-1.1.1.tar.gz :
  CHECKSUM(SHA256) this package     : fa0536d79cfda60857e0d88a4bf072ebc462418d5f85621fcaa37aa72299e422
  CHECKSUM(SHA256) upstream package : fa0536d79cfda60857e0d88a4bf072ebc462418d5f85621fcaa37aa72299e422


Requires
--------
python3-devicely (rpmlib, GLIBC filtered):
    python(abi)
    python3.10dist(importlib-metadata)
    python3.10dist(numpy)
    python3.10dist(pandas)
    python3.10dist(pyedflib)

python-devicely-doc (rpmlib, GLIBC filtered):



Provides
--------
python3-devicely:
    python-devicely
    python3-devicely
    python3-devicely(x86-64)
    python3.10-devicely
    python3.10dist(devicely)
    python3dist(devicely)

python-devicely-doc:
    python-devicely-doc
    python-devicely-doc(x86-64)



Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
Command line :/usr/bin/fedora-review -b 2034723
Buildroot used: fedora-rawhide-x86_64
Active plugins: Generic, Python, Shell-api
Disabled plugins: SugarActivity, fonts, Haskell, C/C++, Perl, Ocaml, PHP, R, Java
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH

Comment 8 Vanessa Christopher 2022-01-25 17:26:37 UTC
This package is approved.

Comment 9 Iztok Fister Jr. 2022-01-25 19:02:11 UTC
Thank you very much for your review!

Comment 10 Gwyn Ciesla 2022-01-25 19:16:58 UTC
(fedscm-admin):  The Pagure repository was created at https://src.fedoraproject.org/rpms/python-devicely

Comment 11 Fedora Update System 2022-01-25 20:50:25 UTC
FEDORA-2022-5e81c76cde has been submitted as an update to Fedora 34. https://bodhi.fedoraproject.org/updates/FEDORA-2022-5e81c76cde

Comment 12 Fedora Update System 2022-01-27 22:33:25 UTC
FEDORA-2022-5e81c76cde has been pushed to the Fedora 34 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2022-5e81c76cde \*`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-5e81c76cde

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 13 Fedora Update System 2022-02-04 01:21:40 UTC
FEDORA-2022-5e81c76cde has been pushed to the Fedora 34 stable repository.
If problem still persists, please make note of it in this bug report.


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