Bug 2220443 - F39FailsToInstall: python3-pyphi
Summary: F39FailsToInstall: python3-pyphi
Keywords:
Status: ASSIGNED
Alias: None
Product: Fedora
Classification: Fedora
Component: python-pyphi
Version: 39
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Ankur Sinha (FranciscoD)
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: PYTHON3.12 F39FailsToInstall F40FailsToInstall, RAWHIDEFailsToInstall
TreeView+ depends on / blocked
 
Reported: 2023-07-05 19:19 UTC by Fedora Fails To Install
Modified: 2023-08-16 07:17 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed:
Type: ---
Embargoed:


Attachments (Terms of Use)


Links
System ID Private Priority Status Summary Last Updated
Github wmayner pyphi issues 108 0 None open Python3.12: Test fails with ValueError 2023-07-26 13:50:11 UTC

Description Fedora Fails To Install 2023-07-05 19:19:01 UTC
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (python-pyphi) Fails To Install in Fedora 39:

can't install python3-pyphi:
  - nothing provides python(abi) = 3.11 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(pyyaml) >= 3.13 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(decorator) >= 4 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(joblib) >= 0.8 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(numpy) >= 1.11 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(psutil) >= 2.1.1 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(pyemd) >= 0.3 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(pymongo) >= 2.7.1 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(redis) >= 2.10.5 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(scipy) >= 0.13.3 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(tblib) >= 1.3.2 needed by python3-pyphi-1.2.1-17.fc39.noarch
  - nothing provides python3.11dist(tqdm) >= 4.20 needed by python3-pyphi-1.2.1-17.fc39.noarch
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-pyphi


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Fedora Fails To Install 2023-07-13 11:57:43 UTC
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

This package fails to install and maintainers are advised to take one of the following actions:

 - Fix this bug and close this bugzilla once the update makes it to the repository.
   (The same script that posted this comment will eventually close this bugzilla
   when the fixed package reaches the repository, so you don't have to worry about it.)

or

 - Move this bug to ASSIGNED if you plan on fixing this, but simply haven't done so yet.

or

 - Orphan the package if you no longer plan to maintain it.


If you do not take one of these actions, the process at https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/#_package_removal_for_long_standing_ftbfs_and_fti_bugs will continue.
This package may be orphaned in 7+ weeks.
This is the first reminder (step 3) from the policy.

Don't hesitate to ask for help on devel.org if you are unsure how to fix this bug.

Comment 2 Sandro 2023-07-14 23:12:30 UTC
Test fails:

============================= slowest 5 durations ==============================
0.13s call     docs/examples/2014paper.rst::2014paper.rst
0.01s call     docs/conventions.rst::conventions.rst
0.00s setup    docs/conventions.rst::conventions.rst
0.00s setup    docs/examples/2014paper.rst::2014paper.rst
0.00s teardown docs/examples/2014paper.rst::2014paper.rst
=========================== short test summary info ============================
FAILED docs/examples/2014paper.rst::2014paper.rst
!!!!!!!!!!!!!!!!!!!!!!!!!! stopping after 1 failures !!!!!!!!!!!!!!!!!!!!!!!!!!!
=================== 1 failed, 1 passed, 17 warnings in 1.87s ===================

Comment 3 Sandro 2023-07-26 13:50:11 UTC
Full traceback:

=================================== FAILURES ===================================
___________________________ [doctest] 2014paper.rst ____________________________
549 
550 Figure 12
551 ~~~~~~~~~
552 
553 **Assessing the integrated conceptual information Φ of a constellation C.**
554 
555 To calculate :math:`\Phi^{\textrm{MIP}}` for a candidate set, we use the
556 function |compute.sia()|:
557 
558     >>> sia = pyphi.compute.sia(subsystem)
UNEXPECTED EXCEPTION: ValueError("Unable to configure handler 'queue'")
Traceback (most recent call last):
  File "/usr/lib64/python3.12/doctest.py", line 1357, in __run
    exec(compile(example.source, filename, "single",
  File "<doctest 2014paper.rst[78]>", line 1, in <module>
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/subsystem.py", line 323, in sia
    return _sia(_sia_cache_key(subsystem), subsystem)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/memory.py", line 35, in wrapper
    return f(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/decorator.py", line 232, in fun
    return caller(func, *(extras + args), **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/utils.py", line 213, in time_annotated
    result = func(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/subsystem.py", line 262, in _sia
    unpartitioned_ces = _ces(subsystem)
                        ^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/subsystem.py", line 208, in _ces
    return ces(subsystem, parallel=config.PARALLEL_CUT_EVALUATION)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/decorator.py", line 232, in fun
    return caller(func, *(extras + args), **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/utils.py", line 213, in time_annotated
    result = func(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/subsystem.py", line 96, in ces
    return CauseEffectStructure(engine.run(parallel or
                                ^^^^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/parallel.py", line 331, in run
    return self.run_parallel()
           ^^^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/parallel.py", line 266, in run_parallel
    r.reraise()
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/parallel.py", line 64, in reraise
    raise self.exception.with_traceback(self.tb.as_traceback())
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/parallel.py", line 174, in worker
    configure_worker_logging(log_queue)
    ^^^^^^^^^^^^^^^^^
  File "/builddir/build/BUILD/pyphi-1.2.1/pyphi/compute/parallel.py", line 361, in configure_worker_logging
    logging.config.dictConfig(
      ^^^^^^^^^^^^^^^^^
  File "/usr/lib64/python3.12/logging/config.py", line 912, in dictConfig
    dictConfigClass(config).configure()
      ^^^^^^^^^^^^^^^^^
  File "/usr/lib64/python3.12/logging/config.py", line 588, in configure
    raise ValueError('Unable to configure handler '
    ^^^^^^^^^^^^^^^^^
ValueError: Unable to configure handler 'queue'
/builddir/build/BUILD/pyphi-1.2.1/docs/examples/2014paper.rst:558: UnexpectedException

I reported it upstream.

Comment 4 Fedora Release Engineering 2023-08-16 07:17:41 UTC
This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle.
Changing version to 39.


Note You need to log in before you can comment on or make changes to this bug.