Bug 2392067 - Review Request: python-snakemake-interface-scheduler-plugins - Scheduler plugin interface for snakemake
Summary: Review Request: python-snakemake-interface-scheduler-plugins - Scheduler plug...
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Benson Muite
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: fedora-neuro, NeuroFedora 2391749
TreeView+ depends on / blocked
 
Reported: 2025-08-30 01:30 UTC by Ben Beasley
Modified: 2025-10-01 00:15 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2025-10-01 00:15:15 UTC
Type: Bug
Embargoed:
benson_muite: fedora-review+


Attachments (Terms of Use)

Description Ben Beasley 2025-08-30 01:30:51 UTC
Spec URL: https://music.fedorapeople.org/python-snakemake-interface-scheduler-plugins.spec
SRPM URL: https://music.fedorapeople.org/python-snakemake-interface-scheduler-plugins-2.0.0-1.fc42~bootstrap.src.rpm

Description:

This package provides a stable interface for interactions between Snakemake and
its scheduler plugins.

Fedora Account System Username: music

This package is a new dependency for snakemake 9.10.0; it requires snakemake 9.10.0 to run its tests, so bootstrapping will be required. I have validated this locally in mock. See https://src.fedoraproject.org/rpms/snakemake/pull-request/73.

Comment 1 Fedora Review Service 2025-08-30 01:34:32 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/9506983
(succeeded)

Review template:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2392067-python-snakemake-interface-scheduler-plugins/fedora-rawhide-x86_64/09506983-python-snakemake-interface-scheduler-plugins/fedora-review/review.txt

Please take a look if any issues were found.


---
This comment was created by the fedora-review-service
https://github.com/FrostyX/fedora-review-service

If you want to trigger a new Copr build, add a comment containing new
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Comment 2 Benson Muite 2025-08-30 08:34:25 UTC
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Package contains BR: python2-devel or python3-devel


===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "MIT License". 15 files have unknown
     license. Detailed output of licensecheck in
     /home/fedora-packaging/reviews/python-snakemake-interface-scheduler-
     plugins/2392067-python-snakemake-interface-scheduler-
     plugins/licensecheck.txt
[x]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/lib/python3.14/site-
     packages, /usr/lib/python3.14
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: No rpmlint messages.
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: The License field must be a valid SPDX expression.
[x]: Package requires other packages for directories it uses.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 9312 bytes in 2 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[-]: Python eggs must not download any dependencies during the build
     process.
[-]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[ ]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: No rpmlint messages.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: python3-snakemake-interface-scheduler-plugins-2.0.0-1.fc44~bootstrap.noarch.rpm
          python-snakemake-interface-scheduler-plugins-2.0.0-1.fc44~bootstrap.src.rpm
============================ rpmlint session starts ============================
rpmlint: 2.7.0
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmpni8ficte')]
checks: 32, packages: 2

 2 packages and 0 specfiles checked; 0 errors, 0 warnings, 10 filtered, 0 badness; has taken 0.5 s 




Rpmlint (installed packages)
----------------------------
============================ rpmlint session starts ============================
rpmlint: 2.7.0
configuration:
    /usr/lib/python3.14/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 1

 1 packages and 0 specfiles checked; 0 errors, 0 warnings, 5 filtered, 0 badness; has taken 0.1 s 



Source checksums
----------------
https://github.com/snakemake/snakemake-interface-scheduler-plugins/archive/v2.0.0/snakemake-interface-scheduler-plugins-2.0.0.tar.gz :
  CHECKSUM(SHA256) this package     : 2674c1e5085c4fec2e5cbf0e82f994db30c5eafd00922d55b3f3d8b8d00e8f41
  CHECKSUM(SHA256) upstream package : 2674c1e5085c4fec2e5cbf0e82f994db30c5eafd00922d55b3f3d8b8d00e8f41


Requires
--------
python3-snakemake-interface-scheduler-plugins (rpmlib, GLIBC filtered):
    (python3.14dist(snakemake-interface-common) < 2~~ with python3.14dist(snakemake-interface-common) >= 1.20.1)
    python(abi)



Provides
--------
python3-snakemake-interface-scheduler-plugins:
    python-snakemake-interface-scheduler-plugins
    python3-snakemake-interface-scheduler-plugins
    python3.14-snakemake-interface-scheduler-plugins
    python3.14dist(snakemake-interface-scheduler-plugins)
    python3dist(snakemake-interface-scheduler-plugins)



Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24
Command line :/usr/bin/fedora-review -b 2392067
Buildroot used: fedora-rawhide-x86_64
Active plugins: Generic, Python, Shell-api
Disabled plugins: C/C++, fonts, Perl, Java, Ocaml, PHP, SugarActivity, R, Haskell
Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH

Comments:
a) Issue is false positive as fedora-review has not been updated for new python packaging macros
b) Tests can be run:
https://copr.fedorainfracloud.org/coprs/build/9507472
c) Approved.
d) Can you re-approve
https://bugzilla.redhat.com/show_bug.cgi?id=2372326
https://bugzilla.redhat.com/show_bug.cgi?id=2373132
This will allow creation of the repositories.

Comment 3 Ben Beasley 2025-08-31 18:38:47 UTC
Thank you for the review! I have commented on both bug 2372326 and bug 2373132.

Comment 4 Ben Beasley 2025-08-31 18:54:05 UTC
https://release-monitoring.org/project/383449/

Comment 5 Fedora Admin user for bugzilla script actions 2025-08-31 18:54:43 UTC
The Pagure repository was created at https://src.fedoraproject.org/rpms/python-snakemake-interface-scheduler-plugins

Comment 6 Fedora Update System 2025-08-31 23:35:20 UTC
FEDORA-2025-4ee6f0a639 (python-snakemake-interface-scheduler-plugins-2.0.0-1.fc43 and snakemake-9.10.0-2.fc43) has been submitted as an update to Fedora 43.
https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

Comment 7 Fedora Update System 2025-09-01 02:09:44 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 8 Fedora Update System 2025-09-02 01:13:03 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 9 Fedora Update System 2025-09-07 04:35:40 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 10 Fedora Update System 2025-09-10 01:36:02 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 11 Fedora Update System 2025-09-11 02:21:06 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 12 Fedora Update System 2025-09-12 02:43:49 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 13 Fedora Update System 2025-09-19 02:51:24 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 14 Fedora Update System 2025-09-21 03:40:51 UTC
FEDORA-2025-4ee6f0a639 has been pushed to the Fedora 43 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-4ee6f0a639`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-4ee6f0a639

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 15 Fedora Update System 2025-10-01 00:15:15 UTC
FEDORA-2025-4ee6f0a639 (python-irodsclient-3.2.0-2.fc43, python-pulp-3.3.0-2.fc43, and 7 more) has been pushed to the Fedora 43 stable repository.
If problem still persists, please make note of it in this bug report.


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