I am starting working on correcting doctest failures in my WIP fedora sagemath package, and matplotlib 1.0.1 is missing too many features and causing several doctest failures (in sage -testall). Example: $ sage -t /usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst sage -t "devel/doc/en/tutorial/tour_plotting.rst" ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 24: sage: circle((0,0), 1, rgbcolor=(1,1,0)) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_0[2]>", line 1, in <module> circle((Integer(0),Integer(0)), Integer(1), rgbcolor=(Integer(1),Integer(1),Integer(0)))###line 24: sage: circle((0,0), 1, rgbcolor=(1,1,0)) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 30: sage: circle((0,0), 1, rgbcolor=(1,1,0), fill=True) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_1[2]>", line 1, in <module> circle((Integer(0),Integer(0)), Integer(1), rgbcolor=(Integer(1),Integer(1),Integer(0)), fill=True)###line 30: sage: circle((0,0), 1, rgbcolor=(1,1,0), fill=True) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 146: sage: contour_plot(f, (-4, 4), (-4, 4)) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_11[3]>", line 1, in <module> contour_plot(f, (-Integer(4), Integer(4)), (-Integer(4), Integer(4)))###line 146: sage: contour_plot(f, (-4, 4), (-4, 4)) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 45: sage: c.show() Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_2[3]>", line 1, in <module> c.show()###line 45: sage: c.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 57: sage: c.show(aspect_ratio=1) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_2[4]>", line 1, in <module> c.show(aspect_ratio=Integer(1))###line 57: sage: c.show(aspect_ratio=1) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 67: sage: plot(cos, (-5,5)) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_3[2]>", line 1, in <module> plot(cos, (-Integer(5),Integer(5)))###line 67: sage: plot(cos, (-5,5)) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 75: sage: parametric_plot((cos(x),sin(x)^3),(x,0,2*pi),rgbcolor=hue(0.6)) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_4[3]>", line 1, in <module> parametric_plot((cos(x),sin(x)**Integer(3)),(x,Integer(0),Integer(2)*pi),rgbcolor=hue(RealNumber('0.6')))###line 75: sage: parametric_plot((cos(x),sin(x)^3),(x,0,2*pi),rgbcolor=hue(0.6)) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 83: sage: plot(x^2,(x,300,500)) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_5[2]>", line 1, in <module> plot(x**Integer(2),(x,Integer(300),Integer(500)))###line 83: sage: plot(x^2,(x,300,500)) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 105: sage: p Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_7[4]>", line 1, in <module> p###line 105: sage: p File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** File "/usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst", line 128: sage: line(v) Exception raised: Traceback (most recent call last): File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/usr/share/sagemath/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_9[3]>", line 1, in <module> line(v)###line 128: sage: line(v) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 176, in displayhook print_obj(sys.stdout, obj) File "/usr/lib64/python2.7/site-packages/sage/misc/displayhook.py", line 144, in print_obj print >>out_stream, `obj` File "sage_object.pyx", line 154, in sage.structure.sage_object.SageObject.__repr__ (sage/structure/sage_object.c:1496) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 803, in _repr_ self.show() File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 1471, in show self.save(DOCTEST_MODE_FILE, **kwds) File "/usr/lib64/python2.7/site-packages/sage/misc/decorators.py", line 456, in wrapper return func(*args, **kwds) File "/usr/lib64/python2.7/site-packages/sage/plot/graphics.py", line 2211, in save figure.tight_layout() AttributeError: 'Figure' object has no attribute 'tight_layout' ********************************************************************** 9 items had failures: 1 of 4 in __main__.example_0 1 of 4 in __main__.example_1 1 of 5 in __main__.example_11 2 of 6 in __main__.example_2 1 of 4 in __main__.example_3 1 of 5 in __main__.example_4 1 of 4 in __main__.example_5 1 of 6 in __main__.example_7 1 of 5 in __main__.example_9 ***Test Failed*** 10 failures. For whitespace errors, see the file /home/pcpa/.sage//tmp/tour_plotting_8918.py [4.0 s] ---------------------------------------------------------------------- The following tests failed: sage -t "devel/doc/en/tutorial/tour_plotting.rst" Total time for all tests: 4.0 seconds
I am working on attempting to provide a more sane matplotlib package, and just sent this email, but I do not have any insight on any previous communication of any involved part, sorry. ---%<---para gpc Hi, I am working on a sagemath package for Fedora, and noticed that there are several doctest failures in my WIP package due to latest fedora having an older matplotlib, but it also appears the matplotlib build is made difficult due to the agg24/include/agg_conv_gpc.h header file, that is removed from the tarball. I am not a lawyer, but I think it should be fair to redistribute it in a free linux, but maybe this is not very well understood in terms of free software. As I understand it, if you make the license state that it is also free for commercial products as long as the source is not modified, it should be ok. Sorry for the inconvenience. I am reworking the package to avoid not even distributing that header in the upstream tarball added to the source rpm, and should comment, as well as make a copy of this email to https://bugzilla.redhat.com/show_bug.cgi?id=837156 Many Thanks, Paulo ---%<---
I got a response from upstream where they thank my message but state there is no plan to change the gpc license in any way. But this should not really be an issue as matplotlib only includes a header to interface to gpc, and a patch to disable it, so, I believe it is not required to regenerate the upstream tarball. I remade a 1.1.0 package (not 1.1.1 due to missing mpl_sampledata-1.1.1.tar.gz) and now sagemath doctest works correctly: ---%<--- $ sage -t /usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst sage -t "devel/doc/en/tutorial/tour_plotting.rst" [17.7 s] ---------------------------------------------------------------------- All tests passed! Total time for all tests: 17.7 seconds ---%<--- I would also suggest making a few extra changes like %defattr, %clean and Buildroot removal, and branching 1.1.0 to rawhide or newer. Suggested package update: Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec SRPM URL: http://fedorapeople.org/~pcpa/python-matplotlib-1.1.0-1.fc18.src.rpm
thanks for the edits. I'm going to be trying to find the cycles to update the packaging for matplotlib,scipy and related this weekend. -jef
It looks like Jef won't be around for awhile: http://lists.fedoraproject.org/pipermail/devel/2012-August/170690.html. I'd like to suggest a few more changes, and a way to update to version 1.1.1: Spec URL: http://jjames.fedorapeople.org/python-matplotlib/python-matplotlib.spec SRPM URL: http://jjames.fedorapeople.org/python-matplotlib/python-matplotlib-1.1.1-1.fc19.src.rpm If that looks acceptable, I'll try rebuilding all dependencies of python-matplotlib against it next week. If the dependencies seem to build and work okay, then I guess we'll have to go ahead without Jef for now.
I will try to have a more complete look at it. I only did carefully look at it when proposing upgrade to 1.1.0, but now, attempting to build your proposed 1.1.1 it fails when building documentation, what could have been a side effect of other rawhide updates, but more likely the fact that I did use plain rpmbuild and not build in a clean chroot: [...] + pushd doc ~/rpmbuild/BUILD/matplotlib-1.1.1/doc ~/rpmbuild/BUILD/matplotlib-1.1.1 ++ find /home/pcpa/rpmbuild/BUILD -name 'lib.linux*' + export 'PYTHONPATH=/home/pcpa/rpmbuild/BUILD/matplotlib-1.1.1/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/sage-5.2/spkg/build/sage-5.2/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/sage-5.2/spkg/build/cython-0.17pre/src/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/matplotlib-1.1.0/build/lib.linux-x86_64-2.7' + PYTHONPATH='/home/pcpa/rpmbuild/BUILD/matplotlib-1.1.1/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/sage-5.2/spkg/build/sage-5.2/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/sage-5.2/spkg/build/cython-0.17pre/src/build/lib.linux-x86_64-2.7 /home/pcpa/rpmbuild/BUILD/matplotlib-1.1.0/build/lib.linux-x86_64-2.7' + /usr/bin/python2 make.py --small html Running Sphinx v1.1.3 Exception occurred: File "/home/pcpa/rpmbuild/BUILD/matplotlib-1.1.1/doc/conf.py", line 188, in <module> """ % matplotlib.__version__numpy__ AttributeError: 'module' object has no attribute '__version__numpy__' The full traceback has been saved in /tmp/sphinx-err-xnUEpB.log, if you want to report the issue to the developers. Please also report this if it was a user error, so that a better error message can be provided next time. Either send bugs to the mailing list at <http://groups.google.com/group/sphinx-dev/>, or report them in the tracker at <http://bitbucket.org/birkenfeld/sphinx/issues/>. Thanks! Building HTML failed. + sed -i 's/\r//' build/html/_sources/devel/add_new_projection.txt sed: can't read build/html/_sources/devel/add_new_projection.txt: No such file or directory error: Bad exit status from /var/tmp/rpm-tmp.Eh24l1 (%build) $ cat /tmp/sphinx-err-xnUEpB.log # Sphinx version: 1.1.3 # Python version: 2.7.3 # Docutils version: 0.10 repository # Jinja2 version: 2.6 Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/sphinx/cmdline.py", line 188, in main warningiserror, tags) File "/usr/lib/python2.7/site-packages/sphinx/application.py", line 102, in __init__ confoverrides or {}, self.tags) File "/usr/lib/python2.7/site-packages/sphinx/config.py", line 216, in __init__ exec code in config File "/home/pcpa/rpmbuild/BUILD/matplotlib-1.1.1/doc/conf.py", line 188, in <module> """ % matplotlib.__version__numpy__ AttributeError: 'module' object has no attribute '__version__numpy__'
I'm happy to help commit once you have something worked up, or troubleshoot if you get stuck.
Sorry I did not look at it further in the weekend, but the problem was not Jerry patch, but existing logic in the spec file, that is not safe to use if one builds several packages with rpmbuild, the problem is the line: [...] pushd doc # Set PYTHONPATH in order to use the just built modules export PYTHONPATH=`find %{_builddir} -name lib.linux*` [...] that was including my sagemath builds and getting confused, probably due to some name clash. I believe due to the fact that in my sagemath builds, by default it builds an internal cython to build the modules; I had too many trouble in the past using system cython, so, delaying patching/debugging for when having an actual sagemath review.
Still fails after removing the sagemath build, should be related to https://github.com/matplotlib/matplotlib/issues/823 Nevertheless, it builds fine with mock, so, needs a clean chroot, probably without a system python-matplotlib of an older version (1.10 in my case) installed. Should be worth investing some time to make a plain rpmbuild work, but only for the sake of testing and if not too much time consuming (I think). For my intend use, appears to work fine: $ rpm -q python-matplotlib sagemath python-matplotlib-1.1.1-1.fc19.x86_64 sagemath-5.2-1.fc18.x86_64 $ sage -t /usr/share/sagemath/devel/doc/en/tutorial/tour_plotting.rst sage -t "devel/doc/en/tutorial/tour_plotting.rst" [9.1 s] ---------------------------------------------------------------------- All tests passed! Total time for all tests: 9.1 seconds
Great. I'm going to try to look at the other users of matplotlib in Fedora this week, to try to avoid breaking stuff gratuitously. Breaking stuff is fine as long as it isn't gratuitous. :-)
I want to thank all of you for pushing ahead and getting this updated without blocking on me. I don't have a lot of bandwidth here, but I just wanted to let you know that I appreciate the work to fill in for me on this package. As soon as I get off the island "paradise" I'm making it a priority to follow up on the matplotlib work your doing and address any thing that has still fallen through the cracks. -jef
Good to see you're still around, Jef. I hope you're enjoying the warm weather. :-) Note to all: I haven't had time this week to see if this update breaks anything, after all, and I likely won't tomorrow either. If my repoquery-fu is up to the task, I think we need to check these packages: APLpy anki ipython openerp-client oscilloscope pondus python-basemap python-cvxopt-examples (my package; if it breaks, I'll fix it) python-nltk python-pebl pytrainer reinteract rootplot scitools-extras seekwatcher If interested parties can try these packages with the package from comment 4 and post here whether each (a) builds, and (b) works, that would be very helpful.
*** Bug 753210 has been marked as a duplicate of this bug. ***
Hi, folks,I'm doing some tests with the packages from "Comment 11". APLpy seems to be broken by matplotlib 1.1.1. Here are the warnings when trying a basic plot: ------------------------ In [1]: import aplpy In [2]: fig = aplpy.FITSFigure('myimage.fits') --------------------------------------------------------------------------- SingularMatrixError Traceback (most recent call last) /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.pyc in expose_event(self, widget, event) 396 x, y, w, h = self.allocation 397 self._pixmap_prepare (w, h) --> 398 self._render_figure(self._pixmap, w, h) 399 self._need_redraw = False 400 /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.pyc in _render_figure(self, pixmap, width, height) 73 def _render_figure(self, pixmap, width, height): 74 if DEBUG: print 'FigureCanvasGTKAgg.render_figure' ---> 75 FigureCanvasAgg.draw(self) 76 if DEBUG: print 'FigureCanvasGTKAgg.render_figure pixmap', pixmap 77 #agg_to_gtk_drawable(pixmap, self.renderer._renderer, None) /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.pyc in draw(self) 419 420 try: --> 421 self.figure.draw(self.renderer) 422 finally: 423 RendererAgg.lock.release() /usr/lib64/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs) 53 def draw_wrapper(artist, renderer, *args, **kwargs): 54 before(artist, renderer) ---> 55 draw(artist, renderer, *args, **kwargs) 56 after(artist, renderer) 57 /usr/lib64/python2.7/site-packages/matplotlib/figure.pyc in draw(self, renderer) 896 dsu.sort(key=itemgetter(0)) 897 for zorder, a, func, args in dsu: --> 898 func(*args) 899 900 renderer.close_group('figure') /usr/lib64/python2.7/site-packages/mpl_toolkits/axes_grid1/parasite_axes.pyc in draw(self, renderer) 290 self.artists.extend(artists) 291 --> 292 self._get_base_axes_attr("draw")(self, renderer) 293 self.artists = orig_artists 294 self.images = orig_images /usr/lib64/python2.7/site-packages/mpl_toolkits/axisartist/axislines.pyc in draw(self, renderer, inframe) 723 724 if not self._axisline_on: --> 725 super(Axes, self).draw(renderer, inframe) 726 return 727 /usr/lib64/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs) 53 def draw_wrapper(artist, renderer, *args, **kwargs): 54 before(artist, renderer) ---> 55 draw(artist, renderer, *args, **kwargs) 56 after(artist, renderer) 57 /usr/lib64/python2.7/site-packages/matplotlib/axes.pyc in draw(self, renderer, inframe) 1995 1996 for zorder, a in dsu: -> 1997 a.draw(renderer) 1998 1999 renderer.close_group('axes') /usr/lib64/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs) 53 def draw_wrapper(artist, renderer, *args, **kwargs): 54 before(artist, renderer) ---> 55 draw(artist, renderer, *args, **kwargs) 56 after(artist, renderer) 57 /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs) 1039 renderer.open_group(__name__) 1040 -> 1041 ticks_to_draw = self._update_ticks(renderer) 1042 ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw, renderer) 1043 /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in _update_ticks(self, renderer) 929 930 interval = self.get_view_interval() --> 931 tick_tups = [ t for t in self.iter_ticks()] 932 if self._smart_bounds: 933 # handle inverted limits /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in iter_ticks(self) 876 Iterate through all of the major and minor ticks. 877 """ --> 878 majorLocs = self.major.locator() 879 majorTicks = self.get_major_ticks(len(majorLocs)) 880 self.major.formatter.set_locs(majorLocs) /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in __call__(self) 309 310 if self.axis.apl_auto_tick_spacing: --> 311 self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) 312 if self.axis.apl_tick_spacing is None: 313 self.axis.apl_tick_positions_pix = [] /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in default_spacing(ax, coord, format) 347 ymin, ymax = ax.yaxis.get_view_interval() 348 --> 349 px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) 350 351 # Keep only pixels that fall inside the sky. This will only really work /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in axis_positions(wcs, axis, farside, xmin, xmax, ymin, ymax) 570 571 # Convert these to world coordinates --> 572 x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) 573 574 return x_pix, y_pix, x_world, y_world /usr/lib/python2.7/site-packages/aplpy/wcs_util.pyc in pix2world(wcs, x_pix, y_pix) 457 return x_world.tolist(), y_world.tolist() 458 elif type(x_pix) in [np.ndarray, np.core.records.recarray, np.ma.core.MaskedArray]: --> 459 return wcs.wcs_pix2sky(x_pix, y_pix, 1) 460 else: 461 raise Exception("pix2world should be provided either with two scalars, two lists, or two numpy arrays") /usr/lib/python2.7/site-packages/aplpy/wcs_util.pyc in wcs_pix2sky(self, x, y, origin) 141 return yw, xw 142 else: --> 143 return pywcs.WCS.wcs_pix2sky(self, x, y, origin) 144 else: 145 coords = [] /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in wcs_pix2sky(self, *args, **kwargs) 700 raise ValueError("No basic WCS settings were created.") 701 return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], --> 702 'output', *args, **kwargs) 703 wcs_pix2sky.__doc__ = """ 704 Transforms pixel coordinates to sky coordinates by doing only /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in _array_converter(self, func, sky, *args, **kwargs) 633 if ra_dec_order and sky == 'input': 634 xy = self._denormalize_sky(xy) --> 635 sky = func(xy, origin) 636 if ra_dec_order and sky == 'output': 637 sky = self._normalize_sky_output(sky) /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in <lambda>(xy, o) 699 if self.wcs is None: 700 raise ValueError("No basic WCS settings were created.") --> 701 return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], 702 'output', *args, **kwargs) 703 wcs_pix2sky.__doc__ = """ SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. --------------------------------------------------------------------------- SingularMatrixError Traceback (most recent call last) /home/lonely/Downloads/APLpy-example/<ipython-input-2-f4c412032d7a> in <module>() ----> 1 fig = aplpy.FITSFigure('myimage.fits') /home/lonely/Downloads/APLpy-example/<string> in __init__(self, data, hdu, figure, subplot, downsample, north, convention, dimensions, slices, auto_refresh, **kwargs) /usr/lib/python2.7/site-packages/aplpy/decorators.pyc in _auto_refresh(f, *args, **kwargs) 21 mydata.nesting = getattr(mydata, 'nesting', 0) + 1 22 try: ---> 23 f(*args, **kwargs) 24 finally: 25 mydata.nesting -= 1 /usr/lib/python2.7/site-packages/aplpy/aplpy.pyc in __init__(self, data, hdu, figure, subplot, downsample, north, convention, dimensions, slices, auto_refresh, **kwargs) 292 293 # Set default theme --> 294 self.set_theme(theme='pretty') 295 296 def _get_hdu(self, data, hdu, north, convention=None, dimensions=[0, 1], slices=[]): /home/lonely/Downloads/APLpy-example/<string> in set_theme(self, theme) /usr/lib/python2.7/site-packages/aplpy/decorators.pyc in _auto_refresh(f, *args, **kwargs) 21 mydata.nesting = getattr(mydata, 'nesting', 0) + 1 22 try: ---> 23 f(*args, **kwargs) 24 finally: 25 mydata.nesting -= 1 /usr/lib/python2.7/site-packages/aplpy/aplpy.pyc in set_theme(self, theme) 1564 self.frame.set_color('black') 1565 self.frame.set_linewidth(1.0) -> 1566 self.ticks.set_color('white') 1567 self.ticks.set_length(7) 1568 self._figure.apl_grayscale_invert_default = False /home/lonely/Downloads/APLpy-example/<string> in set_color(self, color) /usr/lib/python2.7/site-packages/aplpy/decorators.pyc in _auto_refresh(f, *args, **kwargs) 21 mydata.nesting = getattr(mydata, 'nesting', 0) + 1 22 try: ---> 23 f(*args, **kwargs) 24 finally: 25 mydata.nesting -= 1 /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in set_color(self, color) 133 134 # Major ticks --> 135 for line in self._ax1.xaxis.get_ticklines(): 136 line.set_color(color) 137 for line in self._ax1.yaxis.get_ticklines(): /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in get_ticklines(self, minor) 1131 if minor: 1132 return self.get_minorticklines() -> 1133 return self.get_majorticklines() 1134 1135 def get_majorticklocs(self): /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in get_majorticklines(self) 1112 'Return the major tick lines as a list of Line2D instances' 1113 lines = [] -> 1114 ticks = self.get_major_ticks() 1115 for tick in ticks: 1116 lines.append(tick.tick1line) /usr/lib64/python2.7/site-packages/matplotlib/axis.pyc in get_major_ticks(self, numticks) 1189 'get the tick instances; grow as necessary' 1190 if numticks is None: -> 1191 numticks = len(self.get_major_locator()()) 1192 if len(self.majorTicks) < numticks: 1193 # update the new tick label properties from the old /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in __call__(self) 309 310 if self.axis.apl_auto_tick_spacing: --> 311 self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) 312 if self.axis.apl_tick_spacing is None: 313 self.axis.apl_tick_positions_pix = [] /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in default_spacing(ax, coord, format) 347 ymin, ymax = ax.yaxis.get_view_interval() 348 --> 349 px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) 350 351 # Keep only pixels that fall inside the sky. This will only really work /usr/lib/python2.7/site-packages/aplpy/ticks.pyc in axis_positions(wcs, axis, farside, xmin, xmax, ymin, ymax) 570 571 # Convert these to world coordinates --> 572 x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) 573 574 return x_pix, y_pix, x_world, y_world /usr/lib/python2.7/site-packages/aplpy/wcs_util.pyc in pix2world(wcs, x_pix, y_pix) 457 return x_world.tolist(), y_world.tolist() 458 elif type(x_pix) in [np.ndarray, np.core.records.recarray, np.ma.core.MaskedArray]: --> 459 return wcs.wcs_pix2sky(x_pix, y_pix, 1) 460 else: 461 raise Exception("pix2world should be provided either with two scalars, two lists, or two numpy arrays") /usr/lib/python2.7/site-packages/aplpy/wcs_util.pyc in wcs_pix2sky(self, x, y, origin) 141 return yw, xw 142 else: --> 143 return pywcs.WCS.wcs_pix2sky(self, x, y, origin) 144 else: 145 coords = [] /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in wcs_pix2sky(self, *args, **kwargs) 700 raise ValueError("No basic WCS settings were created.") 701 return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], --> 702 'output', *args, **kwargs) 703 wcs_pix2sky.__doc__ = """ 704 Transforms pixel coordinates to sky coordinates by doing only /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in _array_converter(self, func, sky, *args, **kwargs) 633 if ra_dec_order and sky == 'input': 634 xy = self._denormalize_sky(xy) --> 635 sky = func(xy, origin) 636 if ra_dec_order and sky == 'output': 637 sky = self._normalize_sky_output(sky) /usr/lib64/python2.7/site-packages/pywcs/pywcs.pyc in <lambda>(xy, o) 699 if self.wcs is None: 700 raise ValueError("No basic WCS settings were created.") --> 701 return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], 702 'output', *args, **kwargs) 703 wcs_pix2sky.__doc__ = """ SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. In [3]: Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py", line 398, in expose_event self._render_figure(self._pixmap, w, h) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py", line 75, in _render_figure FigureCanvasAgg.draw(self) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py", line 421, in draw self.figure.draw(self.renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/figure.py", line 898, in draw func(*args) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axes_grid1/parasite_axes.py", line 292, in draw self._get_base_axes_attr("draw")(self, renderer) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axisartist/axislines.py", line 725, in draw super(Axes, self).draw(renderer, inframe) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 1997, in draw a.draw(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1041, in draw ticks_to_draw = self._update_ticks(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 931, in _update_ticks tick_tups = [ t for t in self.iter_ticks()] File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 878, in iter_ticks majorLocs = self.major.locator() File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. If you suspect this is an IPython bug, please report it at: https://github.com/ipython/ipython/issues or send an email to the mailing list at ipython-dev You can print a more detailed traceback right now with "%tb", or use "%debug" to interactively debug it. Extra-detailed tracebacks for bug-reporting purposes can be enabled via: %config Application.verbose_crash=True Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py", line 398, in expose_event self._render_figure(self._pixmap, w, h) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py", line 75, in _render_figure FigureCanvasAgg.draw(self) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py", line 421, in draw self.figure.draw(self.renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/figure.py", line 898, in draw func(*args) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axes_grid1/parasite_axes.py", line 292, in draw self._get_base_axes_attr("draw")(self, renderer) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axisartist/axislines.py", line 725, in draw super(Axes, self).draw(renderer, inframe) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 1997, in draw a.draw(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1041, in draw ticks_to_draw = self._update_ticks(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 931, in _update_ticks tick_tups = [ t for t in self.iter_ticks()] File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 878, in iter_ticks majorLocs = self.major.locator() File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. If you suspect this is an IPython bug, please report it at: https://github.com/ipython/ipython/issues or send an email to the mailing list at ipython-dev You can print a more detailed traceback right now with "%tb", or use "%debug" to interactively debug it. Extra-detailed tracebacks for bug-reporting purposes can be enabled via: %config Application.verbose_crash=True Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.py", line 398, in expose_event self._render_figure(self._pixmap, w, h) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtkagg.py", line 75, in _render_figure FigureCanvasAgg.draw(self) File "/usr/lib64/python2.7/site-packages/matplotlib/backends/backend_agg.py", line 421, in draw self.figure.draw(self.renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/figure.py", line 898, in draw func(*args) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axes_grid1/parasite_axes.py", line 292, in draw self._get_base_axes_attr("draw")(self, renderer) File "/usr/lib64/python2.7/site-packages/mpl_toolkits/axisartist/axislines.py", line 725, in draw super(Axes, self).draw(renderer, inframe) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axes.py", line 1997, in draw a.draw(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/artist.py", line 55, in draw_wrapper draw(artist, renderer, *args, **kwargs) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1041, in draw ticks_to_draw = self._update_ticks(renderer) File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 931, in _update_ticks tick_tups = [ t for t in self.iter_ticks()] File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 878, in iter_ticks majorLocs = self.major.locator() File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. If you suspect this is an IPython bug, please report it at: https://github.com/ipython/ipython/issues or send an email to the mailing list at ipython-dev You can print a more detailed traceback right now with "%tb", or use "%debug" to interactively debug it. Extra-detailed tracebacks for bug-reporting purposes can be enabled via: %config Application.verbose_crash=True
(In reply to comment #13) > Hi, folks,I'm doing some tests with the packages from "Comment 11". > APLpy seems to be broken by matplotlib 1.1.1. > Here are the warnings when trying a basic plot: > ------------------------ > > In [1]: import aplpy > > In [2]: fig = aplpy.FITSFigure('myimage.fits') > --------------------------------------------------------------------------- > SingularMatrixError Traceback (most recent call last) > /usr/lib64/python2.7/site-packages/matplotlib/backends/backend_gtk.pyc in > expose_event(self, widget, event) > 396 x, y, w, h = self.allocation > 397 self._pixmap_prepare (w, h) > --> 398 self._render_figure(self._pixmap, w, h) [...] I tested a simple "import aplpy;fig = aplpy.FITSFigure('some-image.fits')" with some images from the net and it did not cause any error. Can you post the sample image or a link to it?
With pleasure: http://python4astronomers.github.com/_downloads/APLpy-example.tar I just renamed one of the images to myimage to just copy and paste the provided examples.
Still works for me: $ wget http://python4astronomers.github.com/_downloads/APLpy-example.tar --2012-09-09 13:23:41-- http://python4astronomers.github.com/_downloads/APLpy-example.tar Resolving python4astronomers.github.com... 204.232.175.78 Connecting to python4astronomers.github.com|204.232.175.78|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 7073280 (6.7M) [application/octet-stream] Saving to: ‘APLpy-example.tar’ 100%[======================================>] 7,073,280 1.70MB/s in 5.4s 2012-09-09 13:23:47 (1.25 MB/s) - ‘APLpy-example.tar’ saved [7073280/7073280] $ tar xf APLpy-example.tar $ cd APLpy-example/ $ ls ngc2264_cutout.fits ngc2264_cutout_mips.fits $ python Python 2.7.3 (default, Aug 9 2012, 17:23:57) [GCC 4.7.1 20120720 (Red Hat 4.7.1-5)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') Fontconfig warning: "/etc/fonts/conf.d/50-user.conf", line 9: reading configurations from ~/.fonts.conf is deprecated. >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout_mips.fits') >>> $ rpm -q APLpy python-matplotlib APLpy-0.9.8-2.fc18.noarch python-matplotlib-1.1.1-1.fc19.x86_64
Let me give it a try in another machiine and I return to you.
(In reply to comment #17) > Let me give it a try in another machiine and I return to you. Any news on this? I think it can also be an issue requiring removal of ~/.matplotlib cache dir.
Sorry for my delay (I was in a trip). I'll give it a try ASAP, but Matplotlib Devel has announced that "1.2.0rc2 is tagged and uploaded". Is there any chance that we're going to skip 1.1 and go 1.2 instead?
There we go: In my first feedback I was using APLpy inside ipython. This time, I'm trying to reproduce the same steps as pcpa (but in F17 and with rm -rf ~/.matplotlib). I've tried with matplotlib 1.0.1-19.fc17.x86_64 and with matplotlib-1.1.1-1.fc17.x86_64: --matplotlib 1.0.1-19.fc17.x86_64------------------------------------- >>> import aplpy >>> fig = aplpy.FITSFigure('ngc2264_cutout.fits') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<string>", line 2, in __init__ File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 294, in __init__ self.set_theme(theme='pretty') File "<string>", line 2, in set_theme File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 1566, in set_theme self.ticks.set_color('white') File "<string>", line 2, in set_color File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 135, in set_color for line in self._ax1.xaxis.get_ticklines(): File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1111, in get_ticklines return self.get_majorticklines() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1092, in get_majorticklines ticks = self.get_major_ticks() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1169, in get_major_ticks numticks = len(self.get_major_locator()()) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. [lonely@localhost APLpy-example]$ rpm -q APLpy python-matplotlib APLpy-0.9.8-1.fc17.noarch python-matplotlib-1.0.1-19.fc17.x86_64 ------------------------------------------------------------------------------- --matplotlib-1.1.1-1.fc17.x86_64------------------------------------- >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<string>", line 2, in __init__ File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 294, in __init__ self.set_theme(theme='pretty') File "<string>", line 2, in set_theme File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 1566, in set_theme self.ticks.set_color('white') File "<string>", line 2, in set_color File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 135, in set_color for line in self._ax1.xaxis.get_ticklines(): File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1133, in get_ticklines return self.get_majorticklines() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1114, in get_majorticklines ticks = self.get_major_ticks() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1191, in get_major_ticks numticks = len(self.get_major_locator()()) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. APLpy-0.9.8-1.fc17.noarch python-matplotlib-1.1.1-1.fc17.x86_64 ------------------------------------------------------------------------------ But you are running APLpy-0.9.8-2.fc18.noarch and I'm on APLpy-0.9.8-1.fc17.noarch.
And, in my new updated F18 box: >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<string>", line 2, in __init__ File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 294, in __init__ self.set_theme(theme='pretty') File "<string>", line 2, in set_theme File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 1566, in set_theme self.ticks.set_color('white') File "<string>", line 2, in set_color File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 135, in set_color for line in self._ax1.xaxis.get_ticklines(): File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1133, in get_ticklines return self.get_majorticklines() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1114, in get_majorticklines ticks = self.get_major_ticks() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1191, in get_major_ticks numticks = len(self.get_major_locator()()) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1693 of file wcs.c: Singular transformation matrix, CDELT1 is zero.
(In reply to comment #21) > And, in my new updated F18 box: > > >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') [...] > _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1693 of file wcs.c: > Singular transformation matrix, CDELT1 is zero. Do you have anything special in pywcs or wcslib by any chance? Do you see something like this on f17? $ ldd /usr/lib64/python2.7/site-packages/pywcs/_pywcs.so linux-vdso.so.1 => (0x00007fff4a9a9000) libwcs.so.4 => /lib64/libwcs.so.4 (0x00007fd19037d000) libm.so.6 => /lib64/libm.so.6 (0x00007fd190082000) libpython2.7.so.1.0 => /lib64/libpython2.7.so.1.0 (0x00007fd18fcc7000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fd18faab000) libc.so.6 => /lib64/libc.so.6 (0x00007fd18f6f4000) libdl.so.2 => /lib64/libdl.so.2 (0x00007fd18f4ef000) libutil.so.1 => /lib64/libutil.so.1 (0x00007fd18f2ec000) /lib64/ld-linux-x86-64.so.2 (0x000000394b800000) if yes, also no output from: $ rpm -V wcslib pywcs ? I cannot reproduce the problems you describe... About earlier comment of using matplotlib 1.2, I will try to test it. Only way of knowing if it works is by testing :-)
Nothing special here: $ ldd /usr/lib64/python2.7/site-packages/pywcs/_pywcs.so linux-vdso.so.1 => (0x00007fff21bff000) libwcs.so.4 => /lib64/libwcs.so.4 (0x00007f88c73c1000) libm.so.6 => /lib64/libm.so.6 (0x00007f88c70c6000) libpython2.7.so.1.0 => /lib64/libpython2.7.so.1.0 (0x00007f88c6d0b000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f88c6aef000) libc.so.6 => /lib64/libc.so.6 (0x00007f88c6738000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f88c6533000) libutil.so.1 => /lib64/libutil.so.1 (0x00007f88c6330000) /lib64/ld-linux-x86-64.so.2 (0x000000380a400000) $ rpm -V wcslib pywcs nothing I've tested APLpy with the previous version of matplotlib (1.0.1) and the result is the same. Maybe this is not matlotlib's fault, but something else. In my F17 I have: wcslib-4.8.4-3.fc17.x86_64 pywcs-1.11-1.fc17.x86_64 python-2.7.3-7.2.fc17.x86_64 APLpy-0.9.8-1.fc17.noarch python-matplotlib-1.1.1-1.fc17.x86_64
Another guess, on a x86_64 up to date f17, without the proposed matplotlib update: xterm1: $ cd APLpy-example/ [pcpa@lemote APLpy-example]$ ls ngc2264_cutout.fits ngc2264_cutout_mips.fits [pcpa@lemote APLpy-example]$ python Python 2.7.3 (default, Jul 24 2012, 10:05:38) [GCC 4.7.0 20120507 (Red Hat 4.7.0-5)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') >>> in xterm2 I figure the pid of the proper python process...: $ pldd 8429 8429: /usr/bin/python2.7 linux-vdso.so.1 /lib64/libpython2.7.so.1.0 /lib64/libpthread.so.0 /lib64/libdl.so.2 /lib64/libutil.so.1 /lib64/libm.so.6 /lib64/libc.so.6 /lib64/ld-linux-x86-64.so.2 /usr/lib64/python2.7/lib-dynload/readline.so /lib64/libreadline.so.6 /lib64/libtinfo.so.5 /usr/lib64/python2.7/lib-dynload/stropmodule.so /usr/lib64/python2.7/lib-dynload/operator.so /usr/lib64/python2.7/lib-dynload/_collectionsmodule.so /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so /usr/lib64/python2.7/lib-dynload/_bisectmodule.so /usr/lib64/python2.7/lib-dynload/_heapq.so /usr/lib64/python2.7/lib-dynload/grpmodule.so /usr/lib64/python2.7/lib-dynload/timemodule.so /usr/lib64/python2.7/lib-dynload/selectmodule.so /usr/lib64/python2.7/lib-dynload/fcntlmodule.so /usr/lib64/python2.7/lib-dynload/_struct.so /usr/lib64/python2.7/lib-dynload/binascii.so /usr/lib64/python2.7/lib-dynload/cStringIO.so /usr/lib64/python2.7/lib-dynload/math.so /usr/lib64/python2.7/lib-dynload/_hashlib.so /lib64/libssl.so.10 /lib64/libcrypto.so.10 /lib64/libgssapi_krb5.so.2 /lib64/libkrb5.so.3 /lib64/libcom_err.so.2 /lib64/libk5crypto.so.3 /lib64/libz.so.1 /lib64/libkrb5support.so.0 /lib64/libkeyutils.so.1 /lib64/libresolv.so.2 /lib64/libgcc_s.so.1 /lib64/libselinux.so.1 /usr/lib64/python2.7/lib-dynload/_randommodule.so /usr/lib64/python2.7/site-packages/numpy/core/multiarray.so /usr/lib64/python2.7/site-packages/numpy/core/umath.so /usr/lib64/python2.7/site-packages/numpy/core/_sort.so /usr/lib64/python2.7/site-packages/numpy/core/_dotblas.so /usr/lib64/atlas/libptf77blas.so.3 /usr/lib64/atlas/libptcblas.so.3 /usr/lib64/atlas/libatlas.so.3 /lib64/libgfortran.so.3 /lib64/libquadmath.so.0 /usr/lib64/python2.7/lib-dynload/cPickle.so /usr/lib64/python2.7/site-packages/numpy/core/scalarmath.so /usr/lib64/python2.7/lib-dynload/_functoolsmodule.so /usr/lib64/python2.7/site-packages/numpy/lib/_compiled_base.so /usr/lib64/python2.7/site-packages/numpy/linalg/lapack_lite.so /usr/lib64/atlas/liblapack.so.3 /usr/lib64/atlas/libf77blas.so.3 /usr/lib64/atlas/libcblas.so.3 /usr/lib64/python2.7/site-packages/numpy/fft/fftpack_lite.so /usr/lib64/python2.7/site-packages/numpy/random/mtrand.so /usr/lib64/python2.7/lib-dynload/_ctypes.so /lib64/libffi.so.5 /usr/lib64/python2.7/lib-dynload/_localemodule.so /usr/lib64/python2.7/lib-dynload/datetime.so /usr/lib64/python2.7/lib-dynload/arraymodule.so /usr/lib64/python2.7/lib-dynload/_socketmodule.so /usr/lib64/python2.7/lib-dynload/_ssl.so /usr/lib64/python2.7/site-packages/matplotlib/_path.so /lib64/libagg.so.2 /lib64/libstdc++.so.6 /usr/lib64/python2.7/site-packages/matplotlib/ft2font.so /lib64/libfreetype.so.6 /usr/lib64/python2.7/site-packages/matplotlib/nxutils.so /usr/lib64/python2.7/lib-dynload/_csv.so /usr/lib64/python2.7/lib-dynload/unicodedata.so /usr/lib64/python2.7/site-packages/matplotlib/_png.so /lib64/libpng15.so.15 /usr/lib64/python2.7/site-packages/matplotlib/_cntr.so /usr/lib64/python2.7/site-packages/matplotlib/_image.so /usr/lib64/python2.7/site-packages/matplotlib/_delaunay.so /usr/lib64/python2.7/site-packages/matplotlib/_tri.so /usr/lib64/python2.7/site-packages/matplotlib/backends/_backend_agg.so /usr/lib64/python2.7/site-packages/glib/_glib.so /lib64/libpyglib-2.0-python.so.0 /lib64/libgobject-2.0.so.0 /lib64/libgthread-2.0.so.0 /lib64/librt.so.1 /lib64/libglib-2.0.so.0 /usr/lib64/python2.7/site-packages/gobject/_gobject.so /usr/lib64/python2.7/site-packages/gtk-2.0/gtk/_gtk.so /lib64/libgtk-x11-2.0.so.0 /lib64/libgdk-x11-2.0.so.0 /lib64/libatk-1.0.so.0 /lib64/libgio-2.0.so.0 /lib64/libpangoft2-1.0.so.0 /lib64/libpangocairo-1.0.so.0 /lib64/libgdk_pixbuf-2.0.so.0 /lib64/libcairo.so.2 /lib64/libpango-1.0.so.0 /lib64/libfontconfig.so.1 /lib64/libgmodule-2.0.so.0 /lib64/libX11.so.6 /lib64/libXfixes.so.3 /lib64/libXext.so.6 /lib64/libXrender.so.1 /lib64/libXinerama.so.1 /lib64/libXi.so.6 /lib64/libXrandr.so.2 /lib64/libXcursor.so.1 /lib64/libXcomposite.so.1 /lib64/libXdamage.so.1 /lib64/libpixman-1.so.0 /lib64/libexpat.so.1 /lib64/libxcb.so.1 /lib64/libXau.so.6 /usr/lib64/python2.7/site-packages/cairo/_cairo.so /usr/lib64/python2.7/site-packages/gtk-2.0/gio/_gio.so /usr/lib64/python2.7/site-packages/gtk-2.0/gio/unix.so /usr/lib64/python2.7/site-packages/gtk-2.0/pango.so /usr/lib64/python2.7/site-packages/gtk-2.0/atk.so /usr/lib64/python2.7/site-packages/gtk-2.0/pangocairo.so /lib64/libnss_files.so.2 /usr/lib64/python2.7/site-packages/matplotlib/backends/_backend_gdk.so /usr/lib64/python2.7/site-packages/matplotlib/backends/_gtkagg.so /usr/lib64/python2.7/lib-dynload/zlibmodule.so /usr/lib64/python2.7/lib-dynload/_io.so /usr/lib64/python2.7/site-packages/pyfits/compression.so /usr/lib64/python2.7/site-packages/pywcs/_pywcs.so /lib64/libwcs.so.4 /usr/lib64/python2.7/site-packages/PIL/_imaging.so /lib64/libjpeg.so.62 /usr/lib64/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-svg.so /lib64/librsvg-2.so.2 /lib64/libcroco-0.6.so.3 /lib64/libxml2.so.2 check if you have anything different...
There we go (updated F17 with matplotlib 1.0.1): [lonely@localhost test]$ cd APLpy-example/ [lonely@localhost APLpy-example]$ ls ngc2264_cutout.fits ngc2264_cutout_mips.fits [lonely@localhost APLpy-example]$ python Python 2.7.3 (default, Jul 24 2012, 10:05:38) [GCC 4.7.0 20120507 (Red Hat 4.7.0-5)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') Traceback (most recent call last): File "<stdin>", line 1, in <module> File "<string>", line 2, in __init__ File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 294, in __init__ self.set_theme(theme='pretty') File "<string>", line 2, in set_theme File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/aplpy.py", line 1566, in set_theme self.ticks.set_color('white') File "<string>", line 2, in set_color File "/usr/lib/python2.7/site-packages/aplpy/decorators.py", line 23, in _auto_refresh f(*args, **kwargs) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 135, in set_color for line in self._ax1.xaxis.get_ticklines(): File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1111, in get_ticklines return self.get_majorticklines() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1092, in get_majorticklines ticks = self.get_major_ticks() File "/usr/lib64/python2.7/site-packages/matplotlib/axis.py", line 1169, in get_major_ticks numticks = len(self.get_major_locator()()) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 311, in __call__ self.axis.apl_tick_spacing = default_spacing(self.axis.get_axes(), self.coord, self.axis.apl_label_form) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 349, in default_spacing px, py, wx, wy = axis_positions(wcs, coord, False, xmin=xmin, xmax=xmax, ymin=ymin, ymax=ymax) File "/usr/lib/python2.7/site-packages/aplpy/ticks.py", line 572, in axis_positions x_world, y_world = wcs_util.pix2world(wcs, x_pix, y_pix) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 459, in pix2world return wcs.wcs_pix2sky(x_pix, y_pix, 1) File "/usr/lib/python2.7/site-packages/aplpy/wcs_util.py", line 143, in wcs_pix2sky return pywcs.WCS.wcs_pix2sky(self, x, y, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 702, in wcs_pix2sky 'output', *args, **kwargs) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 635, in _array_converter sky = func(xy, origin) File "/usr/lib64/python2.7/site-packages/pywcs/pywcs.py", line 701, in <lambda> return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. >>> $ pldd 27390 (149 mine against 133 yours) 27390: /usr/bin/python2.7 linux-vdso.so.1 /lib64/libpython2.7.so.1.0 /lib64/libpthread.so.0 /lib64/libdl.so.2 /lib64/libutil.so.1 /lib64/libm.so.6 /lib64/libc.so.6 /lib64/ld-linux-x86-64.so.2 /usr/lib64/python2.7/lib-dynload/readline.so /lib64/libreadline.so.6 /lib64/libtinfo.so.5 /usr/lib64/python2.7/lib-dynload/stropmodule.so /usr/lib64/python2.7/lib-dynload/operator.so /usr/lib64/python2.7/lib-dynload/_collectionsmodule.so /usr/lib64/python2.7/lib-dynload/itertoolsmodule.so /usr/lib64/python2.7/lib-dynload/_bisectmodule.so /usr/lib64/python2.7/lib-dynload/_heapq.so /usr/lib64/python2.7/lib-dynload/grpmodule.so /usr/lib64/python2.7/lib-dynload/timemodule.so /usr/lib64/python2.7/lib-dynload/selectmodule.so /usr/lib64/python2.7/lib-dynload/fcntlmodule.so /usr/lib64/python2.7/lib-dynload/_struct.so /usr/lib64/python2.7/lib-dynload/binascii.so /usr/lib64/python2.7/lib-dynload/cStringIO.so /usr/lib64/python2.7/lib-dynload/math.so /usr/lib64/python2.7/lib-dynload/_hashlib.so /lib64/libssl.so.10 /lib64/libcrypto.so.10 /lib64/libgssapi_krb5.so.2 /lib64/libkrb5.so.3 /lib64/libcom_err.so.2 /lib64/libk5crypto.so.3 /lib64/libz.so.1 /lib64/libkrb5support.so.0 /lib64/libkeyutils.so.1 /lib64/libresolv.so.2 /lib64/libgcc_s.so.1 /lib64/libselinux.so.1 /usr/lib64/python2.7/lib-dynload/_randommodule.so /usr/lib64/python2.7/site-packages/numpy/core/multiarray.so /usr/lib64/python2.7/site-packages/numpy/core/umath.so /usr/lib64/python2.7/site-packages/numpy/core/_sort.so /usr/lib64/python2.7/site-packages/numpy/core/_dotblas.so /usr/lib64/atlas/libptf77blas.so.3 /usr/lib64/atlas/libptcblas.so.3 /usr/lib64/atlas/libatlas.so.3 /lib64/libgfortran.so.3 /lib64/libquadmath.so.0 /usr/lib64/python2.7/lib-dynload/cPickle.so /usr/lib64/python2.7/site-packages/numpy/core/scalarmath.so /usr/lib64/python2.7/lib-dynload/_functoolsmodule.so /usr/lib64/python2.7/site-packages/numpy/lib/_compiled_base.so /usr/lib64/python2.7/site-packages/numpy/linalg/lapack_lite.so /usr/lib64/atlas/liblapack.so.3 /usr/lib64/atlas/libf77blas.so.3 /usr/lib64/atlas/libcblas.so.3 /usr/lib64/python2.7/site-packages/numpy/fft/fftpack_lite.so /usr/lib64/python2.7/site-packages/numpy/random/mtrand.so /usr/lib64/python2.7/lib-dynload/_ctypes.so /lib64/libffi.so.5 /usr/lib64/python2.7/lib-dynload/_localemodule.so /usr/lib64/python2.7/lib-dynload/datetime.so /usr/lib64/python2.7/lib-dynload/arraymodule.so /usr/lib64/python2.7/lib-dynload/_socketmodule.so /usr/lib64/python2.7/lib-dynload/_ssl.so /usr/lib64/python2.7/site-packages/matplotlib/_path.so /lib64/libagg.so.2 /lib64/libstdc++.so.6 /usr/lib64/python2.7/site-packages/matplotlib/ft2font.so /lib64/libfreetype.so.6 /usr/lib64/python2.7/site-packages/matplotlib/nxutils.so /usr/lib64/python2.7/lib-dynload/_csv.so /usr/lib64/python2.7/lib-dynload/unicodedata.so /usr/lib64/python2.7/site-packages/matplotlib/_png.so /lib64/libpng15.so.15 /usr/lib64/python2.7/site-packages/matplotlib/_cntr.so /usr/lib64/python2.7/site-packages/matplotlib/_image.so /usr/lib64/python2.7/site-packages/matplotlib/_delaunay.so /usr/lib64/python2.7/site-packages/matplotlib/_tri.so /usr/lib64/python2.7/site-packages/matplotlib/backends/_backend_agg.so /usr/lib64/python2.7/site-packages/glib/_glib.so /lib64/libpyglib-2.0-python.so.0 /lib64/libgobject-2.0.so.0 /lib64/libgthread-2.0.so.0 /lib64/librt.so.1 /lib64/libglib-2.0.so.0 /usr/lib64/python2.7/site-packages/gobject/_gobject.so /usr/lib64/python2.7/site-packages/gtk-2.0/gtk/_gtk.so /lib64/libgtk-x11-2.0.so.0 /lib64/libgdk-x11-2.0.so.0 /lib64/libatk-1.0.so.0 /lib64/libgio-2.0.so.0 /lib64/libpangoft2-1.0.so.0 /lib64/libpangocairo-1.0.so.0 /lib64/libgdk_pixbuf-2.0.so.0 /lib64/libcairo.so.2 /lib64/libpango-1.0.so.0 /lib64/libfontconfig.so.1 /lib64/libgmodule-2.0.so.0 /lib64/libX11.so.6 /lib64/libXfixes.so.3 /lib64/libXext.so.6 /lib64/libXrender.so.1 /lib64/libXinerama.so.1 /lib64/libXi.so.6 /lib64/libXrandr.so.2 /lib64/libXcursor.so.1 /lib64/libXcomposite.so.1 /lib64/libXdamage.so.1 /lib64/libpixman-1.so.0 /lib64/libexpat.so.1 /lib64/libxcb.so.1 /lib64/libXau.so.6 /usr/lib64/python2.7/site-packages/cairo/_cairo.so /usr/lib64/python2.7/site-packages/gtk-2.0/gio/_gio.so /usr/lib64/python2.7/site-packages/gtk-2.0/gio/unix.so /usr/lib64/python2.7/site-packages/gtk-2.0/pango.so /usr/lib64/python2.7/site-packages/gtk-2.0/atk.so /usr/lib64/python2.7/site-packages/gtk-2.0/pangocairo.so /lib64/libnss_files.so.2 /usr/lib64/gtk-2.0/2.10.0/engines/libclearlooks.so /usr/lib64/gtk-2.0/modules/libpk-gtk-module.so /usr/lib64/gtk-2.0/modules/libcanberra-gtk-module.so /lib64/libcanberra-gtk.so.0 /lib64/libcanberra.so.0 /lib64/libvorbisfile.so.3 /lib64/libvorbis.so.0 /lib64/libogg.so.0 /lib64/libtdb.so.1 /lib64/libltdl.so.7 /lib64/libcrypt.so.1 /lib64/libfreebl3.so /usr/lib64/python2.7/site-packages/matplotlib/backends/_backend_gdk.so /usr/lib64/python2.7/site-packages/matplotlib/backends/_gtkagg.so /usr/lib64/gconv/ISO8859-1.so /usr/lib64/python2.7/lib-dynload/zlibmodule.so /usr/lib64/python2.7/lib-dynload/_io.so /usr/lib64/python2.7/site-packages/pyfits/compression.so /usr/lib64/python2.7/site-packages/pywcs/_pywcs.so /lib64/libwcs.so.4 /usr/lib64/python2.7/site-packages/PIL/_imaging.so /lib64/libjpeg.so.62 /usr/lib64/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-svg.so /lib64/librsvg-2.so.2 /lib64/libcroco-0.6.so.3 /lib64/libxml2.so.2 /usr/lib64/python2.7/lib-dynload/syslog.so ------------------------------------------------------- [lonely@localhost Documentos]$ diff pldd1.txt pldd2.txt 1,2c1,2 < $ pldd 27390 < 27390: /usr/bin/python2.7 --- > $ pldd 8429 > 8429: /usr/bin/python2.7 123,134d122 < /usr/lib64/gtk-2.0/2.10.0/engines/libclearlooks.so < /usr/lib64/gtk-2.0/modules/libpk-gtk-module.so < /usr/lib64/gtk-2.0/modules/libcanberra-gtk-module.so < /lib64/libcanberra-gtk.so.0 < /lib64/libcanberra.so.0 < /lib64/libvorbisfile.so.3 < /lib64/libvorbis.so.0 < /lib64/libogg.so.0 < /lib64/libtdb.so.1 < /lib64/libltdl.so.7 < /lib64/libcrypt.so.1 < /lib64/libfreebl3.so 137d124 < /usr/lib64/gconv/ISO8859-1.so 149d135 < /usr/lib64/python2.7/lib-dynload/syslog.so
Ok. I was obligated to google a bit about it :-) The hint was https://github.com/aplpy/aplpy/issues/2: ---%<--- $ LC_ALL=pt_BR python Python 2.7.3 (default, Jul 24 2012, 10:05:38) [GCC 4.7.0 20120507 (Red Hat 4.7.0-5)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import aplpy;fig = aplpy.FITSFigure('ngc2264_cutout.fits') Traceback (most recent call last): [...] return self._array_converter(lambda xy, o: self.wcs.p2s(xy, o)['world'], _pywcs.SingularMatrixError: ERROR 3 in wcsset() at line 1661 of file wcs.c: Singular transformation matrix, CDELT1 is zero. >>> ---%<--- So, the issue is if you are using a locale with "," (or anything else) instead of "." as "decimal" separator.
Wow, nice detective work. https://github.com/astropy/astropy/pull/313
Should I open a bug against pywcs? By the way, I was playing with your matplotlib 1.1.1 and it is working nicely. All new features are OK.
Is there any progress on this bug? Getting sagemath into Fedora would be a very nice achievement. Moreover, current Fedora matploblib is really getting stale. There have been major changes to the animation API and many other improvement, so that an update would be highly appreciated. I noticed that a release of 1.2 is imminent, so would it be possible to upgrade to 1.2rcX or final 1.2 once released straight away? See http://sourceforge.net/mailarchive/forum.php?thread_name=CAM-Pw03F43V-m2uEZyre1nrLcjag%2BoRugx0AnSuHnNQR82MgGA%40mail.gmail.com&forum_name=matplotlib-devel
It looks like Matplotlib 1.2.0, which supports Python 3, was released on November 8.
I've performed tests with the package provided by pcpa and it works OK. As far as I know, Fedora is the distro (openSUSE, Ubuntu, Mandriva) with oldest release of matplotlib right now.
Jerry, Jef, is either of you still planning to do this or should I?
(In reply to comment #32) > Jerry, Jef, is either of you still planning to do this or should I? Once updating, please also make a f18 update; I hope to have a proper f18 sagemath update package... Anyway, I just asked for python-matplotlib commit acl for f18 and rawhide, so I can also do it. Or maybe we are waiting for matplotlib 1.2 release? :-)
(In reply to comment #33) > > Anyway, I just asked for python-matplotlib commit acl for f18 and > rawhide, so I can also do it. Even without commit access, you should be able to post patches if you're working on it in the meantime. > Or maybe we are waiting for matplotlib 1.2 release? :-) The 1.2 release is already out, so if you're working on the update anyway, there's no reason not to include the new release.
(In reply to comment #34) > (In reply to comment #33) > > > > Anyway, I just asked for python-matplotlib commit acl for f18 and > > rawhide, so I can also do it. > > Even without commit access, you should be able to post patches if you're > working on it in the meantime. I already posted a RFE for 1.1.0 in #c2 and it is good enough for my work in progress sagemath package, and I have it in my f17 sagemath repository and my prebuilt sagemath packages. Well, actually in my rawhide computer I have 1.1.1 installed from James srpm. > > Or maybe we are waiting for matplotlib 1.2 release? :-) > > The 1.2 release is already out, so if you're working on the update anyway, > there's no reason not to include the new release. http://sourceforge.net/projects/matplotlib/ still lists 1.1.0 as the latest release (well, looking t the files link there is 1.1.1). Just in case this was the issue (I probably was wrong but was not contested, so did not learn at that time about my fault), I remade a 1.1.0 package to remove agg24/include/agg_conv_gpc.h from the tarball instead of having pristine upstream tarball in the srpm. New suggested package update, using the "default" latest sourceforge link that is 1.1.0, not 1.1.1, sorry James :-) (but the 1.1.1 package works correctly for me): Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec SRPM URL: http://fedorapeople.org/~pcpa/python-matplotlib-1.1.0-2.fc19.src.rpm I think the comment on "BuildRequires: python-xlwt" can be removed, as it is already available in f18. I also changed to use __provides_exclude_from instead of __provides_exclude_from (#877581) or it would block when finishing the build.
(In reply to comment #35) > > > The 1.2 release is already out, so if you're working on the update anyway, > > there's no reason not to include the new release. > > http://sourceforge.net/projects/matplotlib/ still lists 1.1.0 > as the latest release (well, looking t the files link there is > 1.1.1). This seems to be the official and more up-to-date download page: https://github.com/matplotlib/matplotlib/downloads
(In reply to comment #36) > This seems to be the official and more up-to-date download page: > https://github.com/matplotlib/matplotlib/downloads And the What's New page is here: http://matplotlib.org/1.2.0/users/whats_new.html It would be a shame not to update to 1.2 at this time. On the matplotlib-devel list, it's talked about as a "very high quality release" and has some nice new features including Python 3 support.
I made a new RFE for 1.2.0: I did remake it merging Jerry changes, where he actually added knowledge of python2 vs python3 to the spec and my last change to again remake the upstream tarball. Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec SRPM URL: http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm You can also see sample build logs at http://koji.fedoraproject.org/koji/taskinfo?taskID=4722055 Only change I did after the koji scratch build was to use %global __provides_exclude_from .*/site-packages/.*\\.so$ instead of %global __provides_exclude_from %{python_sitearch}/site-packages/.*\\.so$ or it would incorrectly provide python3 private shared objects. Good news is I added python3 support, bad news is that I did not test it :-), there may be issues, as it cannot build documentation with python3 claiming a syntax error, neither, as expected, build documentation with python2 in the python3 build tree, so, I just disabled python3 documentation. I also removed the wx backend support as it is not yet (AFAIK) ported to python3, neither (AFAIK) supported by matplotlib 1.2.0. Also, I added a small patch to detect tk, and changed it to use the default "agg" backend. For my own needs it works correctly: ---%<--- $ rpm -q python-matplotlib sagemath python-matplotlib-1.2.0-1.fc19.x86_64 sagemath-5.4-2.fc19.x86_64 $ sage -t "devel/doc/en/tutorial/tour_plotting.rst" sage -t "devel/doc/en/tutorial/tour_plotting.rst" [8.5 s] ---------------------------------------------------------------------- All tests passed! Total time for all tests: 8.6 seconds ---%<--- as well as the test case added in #c16. Well, other than a quick packaging for upgrade and RFE, I had very few knowledge of the package, now I know a bit more, and know of some issues it could be made better, but for now I am more interested in knowing if I broke something, so, please test! Now I have python-matplotlib write ACL, thanks :-) So, if everybody is happy with it or nobody says anything, in a few days I will make a rawhide build and a f18 update.
I've come across a few minor issues. (In reply to comment #38) > > SRPM URL: > http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm I'm getting a 404 error on this URL, but 1.2.0-1 seems to be available. I can't build the python3 subpackage because python3-pytz is a prerequisite. The Python 3 support only seems to be included in the rawhide version of the package. Do you know if there are any plans yet for a Fedora 18 version of the python3-pytz package?
One more problem: file /usr/lib/python3.3/site-packages/__pycache__/six.cpython-33.pyc from install of python3-matplotlib-1.2.0-1.fc19.i686 conflicts with file from package python3-six-1.2.0-1.fc18.noarch So, python3-matplotlib should depend on the python3-six package instead of bundling six.py.
(In reply to comment #39) > I've come across a few minor issues. > > (In reply to comment #38) > > > > SRPM URL: > > http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm > > I'm getting a 404 error on this URL, but 1.2.0-1 seems to be available. Ops, cut&paste fail :-) Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec SRPM URL: http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm Many thanks for testing! > I can't build the python3 subpackage because python3-pytz is a prerequisite. > The Python 3 support only seems to be included in the rawhide version of the > package. Do you know if there are any plans yet for a Fedora 18 version of > the python3-pytz package? I remember I opened a bug report about it, https://bugzilla.redhat.com/show_bug.cgi?id=857266 Do you think it is really required to build python3-matplotlib for fedora 18? If not building, just changing the first spec line is enough: -%if 0%{?fedora} >= 18 +%if 0%{?fedora} > 18 Otherwise, need another RFE to merge master in f18 of pytz and make an update; hmm, maybe better to just disable it for f18, or let it use the one embedded in matplotlib tarball for python3? $ repoquery --whatrequires pytz ReviewBoard-0:1.6.11-1.fc18.noarch anaconda-0:18.11-1.fc19.x86_64 openerp-0:6.1-2.fc19.noarch python-django-horizon-0:2012.2-4.fc19.noarch python-djblets-0:0.7.2-1.fc19.noarch python-flask-babel-0:0.8-4.fc19.noarch python-icalendar-0:3.0.1-0.2.b2.fc18.noarch python-matplotlib-0:1.0.1-21.fc18.x86_64 python-moksha-common-0:1.0.6-1.fc19.noarch python-pandas-0:0.9.0-1.fc19.x86_64 python-soaplib-0:0.8.1-7.fc18.noarch python-zope-i18n-0:3.7.4-5.fc18.noarch tryton-0:2.6.0-1.fc19.noarch trytond-0:2.6.0-1.fc19.noarch
(In reply to comment #40) > One more problem: > > file /usr/lib/python3.3/site-packages/__pycache__/six.cpython-33.pyc from > install of python3-matplotlib-1.2.0-1.fc19.i686 conflicts with file from > package python3-six-1.2.0-1.fc18.noarch > > So, python3-matplotlib should depend on the python3-six package instead of > bundling six.py. Thanks again! I will make a new package, change will be to disable python3 in <= f18 and to build requires python3-six. (testing a build now...)
(In reply to comment #41) > > Ops, cut&paste fail :-) > > Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec > SRPM URL: > http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm Hmm. I'm still getting a 404, but I'm happily testing the 1.2.0-1 version, so it's not a bit deal. > Many thanks for testing! No problem. I'm happy to help. > > I can't build the python3 subpackage because python3-pytz is a prerequisite. > > The Python 3 support only seems to be included in the rawhide version of the > > package. Do you know if there are any plans yet for a Fedora 18 version of > > the python3-pytz package? > > I remember I opened a bug report about it, > https://bugzilla.redhat.com/show_bug.cgi?id=857266 > > Do you think it is really required to build python3-matplotlib > for fedora 18? If not building, just changing the first spec > line is enough: > > -%if 0%{?fedora} >= 18 > +%if 0%{?fedora} > 18 > > Otherwise, need another RFE to merge master in f18 of > pytz and make an update; hmm, maybe better to just > disable it for f18, or let it use the one embedded > in matplotlib tarball for python3? The python3-pytz package exists in koji for Fedora 19, so I was able to install that. It seems like it would be enough just to request that python3-pytz also get included in Fedora 18. But I'm familiar with bug #857266, so I'm not sure I really understand what's going on.
(In reply to comment #42) > > Thanks again! I will make a new package, change will > be to disable python3 in <= f18 and to build requires > python3-six. > (testing a build now...) Disabling python3 in Fedora 18 sounds sad--is this a permanent change or just a temporary workaround?
(In reply to comment #44) > Disabling python3 in Fedora 18 sounds sad--is this a permanent change or > just a temporary workaround? I just opened a RFE for pytz rebuild/update https://bugzilla.redhat.com/show_bug.cgi?id=879731 Deferring it now is a good recipe to not build it...
For the moment, this is what should be submitted, disabling python3 for f18 and correcting the conflict with python3-six. BTW, I did not notice the python3-six conflict because python3-six installs in /usr/lib/python3.3/... and I did test in x86_64 and python-matplotlib was installing the conflicting file in /usr/lib64/python3.3/... Spec URL: http://fedorapeople.org/~pcpa/python-matplotlib.spec SRPM URL: http://fedorapeople.org/~pcpa/python-matplotlib-1.2.0-2.fc19.src.rpm
pcpa, I think it looks pretty good. If you submit it to updates-testing, I would be happy to give it a test.
(In reply to comment #47) > pcpa, I think it looks pretty good. If you submit it to updates-testing, I > would be happy to give it a test. You may want to test to confirm everything is with the pytz update, then login and give positive karma to https://admin.fedoraproject.org/updates/pytz-2012d-2.fc18 to speed it up, so I can submit python-matplotlib 1.2.0 to updates-testing with python3 enabled for f18.
I got a message saying that the pytz is being pushed to stable, so hopefully you'll be able to submit the python3-matplotlib package soon. By the way, you've done a great job getting all of this rolling.
It looks like pytz has been pushed to stable, so it should now be possible to push a new matplotlib build. I'm happy to help test it out once it's in.
(In reply to comment #50) > It looks like pytz has been pushed to stable, so it should now be possible > to push a new matplotlib build. I'm happy to help test it out once it's in. Yes, sorry for the delay :-) I just got back to home, am doing a mock build test and if everything goes well, will shortly update git and submit rawhide and f18 builds.
python-matplotlib-1.2.0-3.fc18 has been submitted as an update for Fedora 18. https://admin.fedoraproject.org/updates/python-matplotlib-1.2.0-3.fc18
I am making a new f18 update candidate because the first one did not pass autoqa in ix86, weird because the same packaging error did pass autoqa in x86_64.
python-matplotlib-1.2.0-4.fc18 has been submitted as an update for Fedora 18. https://admin.fedoraproject.org/updates/python-matplotlib-1.2.0-4.fc18
Package python-matplotlib-1.2.0-3.fc18: * should fix your issue, * was pushed to the Fedora 18 testing repository, * should be available at your local mirror within two days. Update it with: # su -c 'yum update --enablerepo=updates-testing python-matplotlib-1.2.0-3.fc18' as soon as you are able to. Please go to the following url: https://admin.fedoraproject.org/updates/FEDORA-2012-19160/python-matplotlib-1.2.0-3.fc18 then log in and leave karma (feedback).