Bug 839024 - [abrt] python-2.7.3-6.fc17: Process /usr/bin/python2.7 was killed by signal 11 (SIGSEGV)
Summary: [abrt] python-2.7.3-6.fc17: Process /usr/bin/python2.7 was killed by signal 1...
Keywords:
Status: CLOSED WONTFIX
Alias: None
Product: Fedora
Classification: Fedora
Component: python
Version: 17
Hardware: x86_64
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Bohuslav "Slavek" Kabrda
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard: abrt_hash:0962d36c1d355419be923aeda20...
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2012-07-10 17:38 UTC by Stefan Friesel
Modified: 2013-07-31 19:30 UTC (History)
5 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2013-07-31 19:29:57 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)
File: build_ids (4.44 KB, text/plain)
2012-07-10 17:38 UTC, Stefan Friesel
no flags Details
File: dso_list (11.25 KB, text/plain)
2012-07-10 17:38 UTC, Stefan Friesel
no flags Details
File: maps (57.46 KB, text/plain)
2012-07-10 17:38 UTC, Stefan Friesel
no flags Details
File: backtrace (61.70 KB, text/plain)
2012-07-10 17:38 UTC, Stefan Friesel
no flags Details

Description Stefan Friesel 2012-07-10 17:38:12 UTC
libreport version: 2.0.10
abrt_version:   2.0.10
backtrace_rating: 4
cmdline:        python ./telehmmatic.py
crash_function: IA__gdk_window_set_geometry_hints
executable:     /usr/bin/python2.7
kernel:         3.4.4-3.fc17.x86_64
pid:            5252
pwd:            /home/sfriesel/Studium/SWP_Telematik/git
time:           Mo 09 Jul 2012 16:14:21 CEST
uid:            1000
username:       sfriesel

backtrace:      Text file, 63178 bytes
build_ids:      Text file, 4551 bytes
dso_list:       Text file, 11515 bytes
maps:           Text file, 58834 bytes

cgroup:
:9:perf_event:/
:8:blkio:/
:7:net_cls:/
:6:freezer:/
:5:devices:/
:4:memory:/
:3:cpuacct,cpu:/
:2:cpuset:/
:1:name=systemd:/user/sfriesel/2

core_backtrace:
:d8d393649ae4da146ebc8812db58514f245f08a9 0x77714 gdk_window_set_geometry_hints libgdk-x11-2.0.so.0 -
:8c1105fdca80308f44d545b954a7dcd518f98db5 0x2931fd - libgtk-x11-2.0.so.0 -
:31243d0d107bba586a96433c76c87a26db1e826c 0xf943 - libgobject-2.0.so.0 -
:31243d0d107bba586a96433c76c87a26db1e826c 0x27d88 g_signal_emit_valist libgobject-2.0.so.0 -
:31243d0d107bba586a96433c76c87a26db1e826c 0x287c2 g_signal_emit libgobject-2.0.so.0 -
:8c1105fdca80308f44d545b954a7dcd518f98db5 0xc0fb0 - libgtk-x11-2.0.so.0 -
:d8d393649ae4da146ebc8812db58514f245f08a9 0x1eb57 - libgdk-x11-2.0.so.0 -
:e5945f7dae3fc83ad499da1ea5a464bfa0e68202 0x476e5 g_main_context_dispatch libglib-2.0.so.0 -
:e5945f7dae3fc83ad499da1ea5a464bfa0e68202 0x47a18 - libglib-2.0.so.0 -
:e5945f7dae3fc83ad499da1ea5a464bfa0e68202 0x47e12 g_main_loop_run libglib-2.0.so.0 -
:8c1105fdca80308f44d545b954a7dcd518f98db5 0x14ac27 gtk_main libgtk-x11-2.0.so.0 -
:e4ee09219dd69e5a1f6b06fb78c7488a3a6260df 0x1a65a8 - _gtk.so -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xdce46 PyEval_EvalFrameEx libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xdcd61 PyEval_EvalFrameEx libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xddb2f PyEval_EvalCodeEx libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xddc02 PyEval_EvalCode libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xf6baa - libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xf79a2 PyRun_FileExFlags libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0xf83bb PyRun_SimpleFileExFlags libpython2.7.so.1.0 -
:efb4769976ac3cc8192277706894a2d7b3256ed1 0x109892 Py_Main libpython2.7.so.1.0 -

environ:
:XDG_VTNR=1
:XDG_SESSION_ID=2
:HOSTNAME=edge
:IMSETTINGS_INTEGRATE_DESKTOP=yes
:GPG_AGENT_INFO=/run/user/sfriesel/keyring-CGlocC/gpg:0:1
:TERM=xterm
:SHELL=/bin/bash
:HISTSIZE=1000
:XDG_SESSION_COOKIE=c2a030263c298bbdca02298b00000010-1341831034.231708-1184666389
:GJS_DEBUG_OUTPUT=stderr
:WINDOWID=39845893
:GNOME_KEYRING_CONTROL=/run/user/sfriesel/keyring-CGlocC
:QTDIR=/usr/lib64/qt-3.3
:QTINC=/usr/lib64/qt-3.3/include
:'GJS_DEBUG_TOPICS=JS ERROR;JS LOG'
:IMSETTINGS_MODULE=none
:QT_GRAPHICSSYSTEM_CHECKED=1
:USER=sfriesel
:LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:
:SSH_AUTH_SOCK=/run/user/sfriesel/keyring-CGlocC/ssh
:USERNAME=sfriesel
:SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/1096,unix/unix:/tmp/.ICE-unix/1096
:PATH=/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/home/sfriesel/.local/bin:/home/sfriesel/bin
:MAIL=/var/spool/mail/sfriesel
:DESKTOP_SESSION=gnome
:LC_MESSAGES=C
:QT_IM_MODULE=xim
:PWD=/home/sfriesel/Studium/SWP_Telematik/git
:XMODIFIERS=@im=none
:EDITOR=nano
:GNOME_KEYRING_PID=1092
:LANG=de_DE.UTF-8
:GDM_LANG=de_DE.utf8
:GDMSESSION=gnome
:HISTCONTROL=erasedups:ignorespace
:HOME=/home/sfriesel
:XDG_SEAT=seat0
:SHLVL=2
:GNOME_DESKTOP_SESSION_ID=this-is-deprecated
:LOGNAME=sfriesel
:QTLIB=/usr/lib64/qt-3.3/lib
:DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-O2HynN4f7c,guid=5953d8343396484fa283460c0000002b
:'LESSOPEN=||/usr/bin/lesspipe.sh %s'
:WINDOWPATH=1
:XDG_RUNTIME_DIR=/run/user/sfriesel
:DISPLAY=:0
:COLORTERM=gnome-terminal
:XAUTHORITY=/var/run/gdm/auth-for-sfriesel-1JGXGa/database
:OLDPWD=/home/sfriesel/Studium/SWP_Telematik
:_=./telehmmatic.py

limits:
:Limit                     Soft Limit           Hard Limit           Units     
:Max cpu time              unlimited            unlimited            seconds   
:Max file size             unlimited            unlimited            bytes     
:Max data size             unlimited            unlimited            bytes     
:Max stack size            8388608              unlimited            bytes     
:Max core file size        0                    unlimited            bytes     
:Max resident set          unlimited            unlimited            bytes     
:Max processes             1024                 29862                processes 
:Max open files            1024                 4096                 files     
:Max locked memory         65536                65536                bytes     
:Max address space         unlimited            unlimited            bytes     
:Max file locks            unlimited            unlimited            locks     
:Max pending signals       29862                29862                signals   
:Max msgqueue size         819200               819200               bytes     
:Max nice priority         0                    0                    
:Max realtime priority     0                    0                    
:Max realtime timeout      unlimited            unlimited            us        

open_fds:
:0:/dev/pts/0
:pos:	0
:flags:	0100002
:1:/dev/pts/0
:pos:	0
:flags:	0100002
:2:/dev/pts/0
:pos:	0
:flags:	0100002
:3:pipe:[133493]
:pos:	0
:flags:	00
:4:pipe:[133493]
:pos:	0
:flags:	04001
:5:socket:[131378]
:pos:	0
:flags:	02004002
:6:socket:[133073]
:pos:	0
:flags:	02004002
:7:anon_inode:[eventfd]
:pos:	0
:flags:	02004002
:8:anon_inode:inotify
:pos:	0
:flags:	02004000
:9:socket:[133616]
:pos:	0
:flags:	02000002
:10:socket:[136258]
:pos:	0
:flags:	02004002

Comment 1 Stefan Friesel 2012-07-10 17:38:16 UTC
Created attachment 597398 [details]
File: build_ids

Comment 2 Stefan Friesel 2012-07-10 17:38:18 UTC
Created attachment 597399 [details]
File: dso_list

Comment 3 Stefan Friesel 2012-07-10 17:38:21 UTC
Created attachment 597400 [details]
File: maps

Comment 4 Stefan Friesel 2012-07-10 17:38:23 UTC
Created attachment 597401 [details]
File: backtrace

Comment 5 Thomas Spura 2012-07-10 20:04:28 UTC
Thanks for the bug report.

How reproducable is this?

Could you maybe upload the file "telehmmatic.py" (or send it via private mail)?
Or trimm it down till it still reproduces this issue?

Comment 6 Stefan Friesel 2012-07-11 02:38:25 UTC
The code can be found at https://github.com/Kijewski/swp-telematik-2012-hidden-markov (current master i.e. f97970db5081e719ba015a49e3d6a29d83f28b9d)

it has graphviz and pygtk as dependencies and can be started by running ./telehmmatic.py in the main directory. The bug is quite reproducible for me (1-3 tries to hit it):
- select Operations>Viterbi
- choose test_data/messung_180m_medium.seq as input file 
- this creates a text file in the curent directory called viterbi_result_<datetime>.seq) and should open a dialog
- crash

If i got spare time tomorrow, I'll try to trim it down. Maybe it's just a bug in our program related to pyGTK (it's an undergraduate project), but I'm not sure if python is supposed to be dumping core in that scenario either.

Comment 7 Stefan Friesel 2012-07-11 11:52:25 UTC
It boiled down to this:
def call_gtk_funcs(w):
	dialog = gtk.MessageDialog(parent = w, buttons = gtk.BUTTONS_OK)
	dialog.connect('response', lambda dialog, response: dialog.destroy())
	dialog.run()

gobject.threads_init()
w = gtk.Window()
b = gtk.Button('click')
b.connect_object('clicked', thread.start_new_thread, call_gtk_funcs, (w,))
w.add(b)
w.show_all()
gtk.main()

So it was basically just a threading issue related to gtk not being thread safe. If Python is expected to dump core in this situation, feel free to mark as not-a-bug.

Comment 8 Fedora Admin XMLRPC Client 2013-05-10 05:02:25 UTC
This package has changed ownership in the Fedora Package Database.  Reassigning to the new owner of this component.

Comment 9 Fedora Admin XMLRPC Client 2013-05-10 05:02:55 UTC
This package has changed ownership in the Fedora Package Database.  Reassigning to the new owner of this component.

Comment 10 Fedora Admin XMLRPC Client 2013-05-10 05:06:33 UTC
This package has changed ownership in the Fedora Package Database.  Reassigning to the new owner of this component.

Comment 11 Fedora Admin XMLRPC Client 2013-05-10 05:14:12 UTC
This package has changed ownership in the Fedora Package Database.  Reassigning to the new owner of this component.

Comment 12 Fedora Admin XMLRPC Client 2013-05-10 05:14:26 UTC
This package has changed ownership in the Fedora Package Database.  Reassigning to the new owner of this component.

Comment 13 Fedora End Of Life 2013-07-03 20:07:11 UTC
This message is a reminder that Fedora 17 is nearing its end of life.
Approximately 4 (four) weeks from now Fedora will stop maintaining
and issuing updates for Fedora 17. It is Fedora's policy to close all
bug reports from releases that are no longer maintained. At that time
this bug will be closed as WONTFIX if it remains open with a Fedora 
'version' of '17'.

Package Maintainer: If you wish for this bug to remain open because you
plan to fix it in a currently maintained version, simply change the 'version' 
to a later Fedora version prior to Fedora 17's end of life.

Bug Reporter:  Thank you for reporting this issue and we are sorry that 
we may not be able to fix it before Fedora 17 is end of life. If you 
would still like  to see this bug fixed and are able to reproduce it 
against a later version  of Fedora, you are encouraged  change the 
'version' to a later Fedora version prior to Fedora 17's end of life.

Although we aim to fix as many bugs as possible during every release's 
lifetime, sometimes those efforts are overtaken by events. Often a 
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Comment 14 Fedora End Of Life 2013-07-31 19:30:02 UTC
Fedora 17 changed to end-of-life (EOL) status on 2013-07-30. Fedora 17 is 
no longer maintained, which means that it will not receive any further 
security or bug fix updates. As a result we are closing this bug.

If you can reproduce this bug against a currently maintained version of 
Fedora please feel free to reopen this bug against that version.

Thank you for reporting this bug and we are sorry it could not be fixed.


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