I did a fedup upgrade and it forgot to install things like the kernel and gnome-shell.

Just figured out the pattern.  

Seems all the files it was pulling via the automount system are being ignored.  Probably because the autofs system won't be active when the upgrade is happening.

First is a question, is there a flag to pull the packages into /var/tmp/fedora-upgrade regardless where they are?

========================================
CMD: fedup-cli --network 19 --addrepo f19-everything-bk=file:///mnt/autofs/Repositories/i386/f19-everything/ --addrepo f19-update-bk=file:///mnt/autofs/Repositories/i386/f19-updates/ -d

========================================
for x in $(grep add_install /var/log/fedup.log | awk -F"add_install" '{print $3}' | awk -F, '{print $1}' | sed "s/^[(]//g") ; do
 base="$(basename $x)"; 
 if [ -s /system-upgrade/${base} ] then; 
   echo "PASS  : "
 else
   echo "FAIL  : "
 fi
 echo $x; 
done
========================================


[root@fedora-upgrade ~]# ./test.sh
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/xorg-x11-drv-openchrome-0.3.3-1.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/astronomy-backgrounds-1.0-7.fc19.noarch.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/shotwell-0.14.1-1.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/usermode-1.111-3.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/cjkuni-uming-fonts-0.2.20080216.1-52.fc19.noarch.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/audit-libs-python-2.3.1-2.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/texlive-bibtex-svn26689.0.99d-22.fc19.noarch.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/cairo-1.12.14-2.fc19.i686.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/device-mapper-persistent-data-0.1.4-3.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/libXt-1.1.4-5.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/evince-nautilus-3.8.2-1.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/x86_64/f19-rpmfusion-free-base/libmad-0.15.1b-16.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/avahi-ui-gtk3-0.6.31-11.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/x86_64/f19-updates/gvfs-gphoto2-1.16.3-2.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/system-config-network-1.6.11-1.fc19.i686.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/nautilus-extensions-3.8.2-1.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/x86_64/f19-everything/gpaste-3.0.2-1.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/pcre-8.32-7.fc19.i686.rpm
FAIL  : /mnt/autofs/Repositories/x86_64/f19-everything/avahi-compat-howl-0.6.31-11.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/i386/f19-everything/texlive-dtxgen-bin-svn29031.0-22.20130427_r30134.fc19.noarch.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/ant-1.8.4-6.fc19.noarch.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/net-snmp-libs-5.7.2-11.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/ftgl-2.1.3-0.8.rc5.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/attr-2.4.46-10.fc19.x86_64.rpm
FAIL  : /mnt/autofs/Repositories/x86_64/f19-everything/texlive-makeindex-bin-svn26509.0-22.20130427_r30134.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/festival-speechtools-libs-1.2.96-25.fc19.x86_64.rpm
PASS  : /var/tmp/fedora-upgrade/default-installrepo/packages/gsettings-desktop-schemas-3.8.2-1.fc19.x86_64.rpm